Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31] 486 sequences; 36,567,111 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq58 118 2e-21 seq85 107 5e-18 seq323 89.7 1e-12 >seq58 Length=162708 Score = 118 bits (130), Expect = 2e-21 Identities = 159/220 (72%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| |||||||||||||||||||| || | |||||| || | | || Sbjct 44081 CGAAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCGGAGAGGGTG 44140 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAAT--TC 199526 | ||||| || |||||||| |||||||| || | |||||||| || ||| || || Sbjct 44141 CGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGATNNTC 44200 Query 199527 CTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 ||| ||||| ||||| |||||| |||| |||||| | || || || || | Sbjct 44201 CTT----GTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCGACCTCGA 44256 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || || ||||| Sbjct 44257 GGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATTTG 44296 >seq85 Length=135120 Score = 107 bits (118), Expect = 5e-18 Identities = 159/225 (71%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | ||| || || |||||||| |||| ||||||||| || || Sbjct 93961 CGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTG 94020 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCC----GGAAAAAT 199524 | ||||| || |||||||| || || ||||| || |||||||||||| ||| | Sbjct 94021 CGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCC 94080 Query 199525 TCCTT---CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTAC 199581 ||||| || | | || ||||| ||| ||| || | |||||| | | || || Sbjct 94081 TCCTTGTCCTGGATNNTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 94140 Query 199582 ATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || | ||||||||||| |||||||| || || || ||||| || Sbjct 94141 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTG 94185 >seq323 Length=1534178 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | | || | ||||| || |||||||| |||||||||| Sbjct 1260295 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 1260236 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | |||||||| ||||| || || || ||||| ||||| ||| || | Sbjct 1260235 TCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1260176 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| |||||| | | || || || | ||||| ||||| ||||| || || ||||| | Sbjct 1260175 CGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 1260116 Query 199620 AA 199621 || Sbjct 1260115 AA 1260114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178914259002562