Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31]
486 sequences; 36,567,111 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq58 118 2e-21
seq85 107 5e-18
seq323 89.7 1e-12
>seq58
Length=162708
Score = 118 bits (130), Expect = 2e-21
Identities = 159/220 (72%), Gaps = 6/220 (3%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||||| |||||||||||||||||||| || | |||||| || | | ||
Sbjct 44081 CGAAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCGGAGAGGGTG 44140
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAAT--TC 199526
| ||||| || |||||||| |||||||| || | |||||||| || ||| || ||
Sbjct 44141 CGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGATNNTC 44200
Query 199527 CTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586
||| ||||| ||||| |||||| |||| |||||| | || || || || |
Sbjct 44201 CTT----GTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCGACCTCGA 44256
Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || ||||| || || || || |||||
Sbjct 44257 GGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATTTG 44296
>seq85
Length=135120
Score = 107 bits (118), Expect = 5e-18
Identities = 159/225 (71%), Gaps = 7/225 (3%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||||| | ||| || || |||||||| |||| ||||||||| || ||
Sbjct 93961 CGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTG 94020
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCC----GGAAAAAT 199524
| ||||| || |||||||| || || ||||| || |||||||||||| ||| |
Sbjct 94021 CGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCC 94080
Query 199525 TCCTT---CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTAC 199581
||||| || | | || ||||| ||| ||| || | |||||| | | || ||
Sbjct 94081 TCCTTGTCCTGGATNNTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 94140
Query 199582 ATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| | ||||||||||| |||||||| || || || ||||| ||
Sbjct 94141 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTG 94185
>seq323
Length=1534178
Score = 89.7 bits (98), Expect = 1e-12
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
|||| |||| ||||||||| | | || | ||||| || |||||||| ||||||||||
Sbjct 1260295 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 1260236
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559
| | |||||||| ||||| || || || ||||| ||||| ||| || |
Sbjct 1260235 TCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1260176
Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
||| |||||| | | || || || | ||||| ||||| ||||| || || ||||| |
Sbjct 1260175 CGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 1260116
Query 199620 AA 199621
||
Sbjct 1260115 AA 1260114
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178914259002562
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |