Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31]
486 sequences; 36,567,111 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq323 120 3e-22
seq58 114 1e-20
seq85 89.7 6e-13
>seq323
Length=1534178
Score = 120 bits (132), Expect = 3e-22
Identities = 135/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||||||||| || || || | || |||||||||||||||||||| |
Sbjct 1260295 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 1260236
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||| |||||||| || | || | || |||||||||| |||||| ||||| |
Sbjct 1260235 TCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1260176
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||| || || || || | |||||||| ||||||||||| || || || |
Sbjct 1260175 CGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 1260116
Query 46584 A 46584
|
Sbjct 1260115 A 1260115
>seq58
Length=162708
Score = 114 bits (126), Expect = 1e-20
Identities = 129/170 (76%), Gaps = 2/170 (1%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| || |||||||| || || || |||| ||||||||||||||||||||
Sbjct 43829 TCCTTCTGGATGTTATAGTCGGAGAGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAA 43888
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| |||||||| || | || | | |||||||||| |||||| ||||| |||
Sbjct 43889 ATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGTT 43947
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571
| | | |||||| || || || || | |||||||| ||||| ||||
Sbjct 43948 GTCGATAGTGTCGGATGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCA 43997
Score = 111 bits (122), Expect = 2e-19
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || ||||| ||||| || ||||| | || ||||||||||||||||||||
Sbjct 44110 CTCCTTCTGAATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 44169
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| |||||||| || | || | ||||||||| |||||| ||| | |
Sbjct 44170 AATCAATCGCTGCTGATCAGGAGGGA--TNNTCCTTGTCCTGGATCTTGGACTTCACATT 44227
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| || || || || | |||||||| ||||| || || || || ||
Sbjct 44228 GTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGAC 44287
Query 46582 AAAGATTTGCAT 46593
|||||||||||
Sbjct 44288 GAAGATTTGCAT 44299
>seq85
Length=135120
Score = 89.7 bits (98), Expect = 6e-13
Identities = 142/200 (71%), Gaps = 9/200 (5%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||| || ||||| | || ||||||||||| || || ||
Sbjct 93990 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 94049
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC---AT----GATCTTCTTCT 46514
|| | ||||||||||| | || | | |||||||||| || |||||| ||
Sbjct 94050 GATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATNNTGGATCTTGGACT 94109
Query 46515 TGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573
||| ||| | | | |||||| || ||||| || | ||||| || || ||||| ||
Sbjct 94110 TGA-CGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGG 94168
Query 46574 GTTTTAACAAAGATTTGCAT 46593
|| || || || || |||||
Sbjct 94169 GTCTTGACGAAAATCTGCAT 94188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565234966176720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |