Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31]
486 sequences; 36,567,111 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq380 188 7e-43
seq85 107 2e-18
seq323 102 8e-17
>seq380
Length=646993
Score = 188 bits (208), Expect = 7e-43
Identities = 379/553 (69%), Gaps = 13/553 (2%)
Strand=Plus/Plus
Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954
|| ||||||||| || | ||||| || | |||||||| ||||| || |||
Sbjct 392208 CAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCAGA 392267
Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014
|| ||||||||||| || || |||||||| || |||| || || || ||||||
Sbjct 392268 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAG 392327
Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC-TTCTT-TGCTGG 133072
| ||||| ||||| || ||||| || || |||| |||| || | ||||| | ||||
Sbjct 392328 ATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCCTGG 392387
Query 133073 CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGT 133132
||||| || | ||||| || ||||| | | || ||| || || || || | |||||
Sbjct 392388 --ATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGT 392445
Query 133133 TCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATA 133190
| || | | | | | || ||| | | |||||| ||||||||| || ||
Sbjct 392446 TGAAGAG--GTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTA 392503
Query 133191 CATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGAC 133250
|||| ||||| | ||||||||| ||| || || || || ||||| || ||||||
Sbjct 392504 TGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGG 392563
Query 133251 CACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGC 133310
| ||| || || ||| ||||| || ||||| || ||||||||||||||| |||
Sbjct 392564 GATCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGC 392623
Query 133311 GGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGT-TGTCGTTCAAGCG---CT 133366
||||| || || || | ||| |||||| | |||||| || | |||| || |
Sbjct 392624 AGCGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAG-TCAATCGGTTGT 392682
Query 133367 CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGG 133426
||||||| | |||||||| || || | |||||| | ||||| || || ||||| |
Sbjct 392683 TCCAGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTG 392742
Query 133427 CTTTTTTGTACAT 133439
| || ||||||||
Sbjct 392743 CCTTCTTGTACAT 392755
>seq85
Length=135120
Score = 107 bits (118), Expect = 2e-18
Identities = 158/222 (71%), Gaps = 7/222 (3%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || |||||||| || || |||||| | || || ||| | ||
Sbjct 94188 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 94129
Query 38304 GACAGCGTGCA-AACGCTTA----AAGAA--AAAATCCTCGACAAAGAGGGAATTCCCGC 38356
|||| | | | |||| | |||| | |||| ||||| ||||| || ||| |
Sbjct 94128 GACACCATTGACAACGTCAAGTCCAAGATCCANNATCCAGGACAAGGAGGGTATCCCCCC 94069
Query 38357 CGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 38416
||||| ||||| || || | || || || ||||| || || | |||||||| | |||
Sbjct 94068 GGACCAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGA 94009
Query 38417 CTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||||||||| ||||| | || || || ||||| || ||
Sbjct 94008 CTACAACATCCAGAAGGAGTCCACCCTTCACTTGGTCCTCCG 93967
>seq323
Length=1534178
Score = 102 bits (112), Expect = 8e-17
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || |||||||| ||||||||| |||| |||||| | | |||| | |
Sbjct 1260115 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCATC 1260174
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| || ||| | || || ||||| |
Sbjct 1260175 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATTG 1260234
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| ||||| || || | || |||||| ||||||||||||||| |||
Sbjct 1260235 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 1260294
Query 38433 G 38433
|
Sbjct 1260295 G 1260295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500169761450240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |