Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31] 486 sequences; 36,567,111 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq85 141 2e-28 seq58 120 7e-22 seq323 116 8e-21 >seq85 Length=135120 Score = 141 bits (156), Expect = 2e-28 Identities = 158/211 (75%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| |||||||| || || || ||||| ||| || || | ||||| |||||||| Sbjct 93978 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTG 94037 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || ||||||||||| || ||||| || || || || || ||||| || || | Sbjct 94038 CTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATNNT 94097 Query 195057 -----TTG--CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 ||| ||||||||| ||||||||||| ||| ||||| |||||||| | ||||| Sbjct 94098 GGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCT 94157 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || | || || ||||| | ||||| Sbjct 94158 TCCCCGTGAGGGTCTTGACGAAAATCTGCAT 94188 >seq58 Length=162708 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| ||||| || ||||| |||||||||| || || | ||||| ||| Sbjct 44093 ACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCGGAGAGGGTGCGGCCATCCTCG 44152 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || | ||| || || || ||||| || || ||||| || Sbjct 44153 AGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGAT--NNTCCTTGTCCTGG 44210 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || || |||||||| || || || || ||||| | ||||| Sbjct 44211 ATCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTG 44270 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | || || ||||| | |||||| Sbjct 44271 CCTGTGAGGGTCTTGACGAAGATTTGCAT 44299 Score = 116 bits (128), Expect = 8e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || || || || || || || || |||| || |||| || || ||| Sbjct 43811 ACCAGGTGAAGGGTTGATTCCTTCTGGATGTTATAGTCGGAGAGGGTTCGACCGTCCTCG 43870 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || | ||| || || || ||||| || || || ||||| || Sbjct 43871 AGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGG 43930 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || || ||||| || || || |||||||| | ||||| Sbjct 43931 ATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCGACCTCAAGGGTGATGGTCTTG 43990 Query 195112 CCTGTCAAAGTTTTTACGA 195130 || ||||| || || |||| Sbjct 43991 CCGGTCAAGGTCTTGACGA 44009 >seq323 Length=1534178 Score = 116 bits (128), Expect = 8e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| || |||| ||||| ||||||||||| || |||||||| Sbjct 1260293 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 1260234 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | ||| || || || || || ||||| || ||||| || || || |||||| || || Sbjct 1260233 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1260174 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 |||||||||||| || || || ||||| | ||||| || |||| || || ||||| Sbjct 1260173 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1260115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109474691396762