Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31] 486 sequences; 36,567,111 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq406 93.3 5e-14 >seq406 Length=352714 Score = 93.3 bits (102), Expect = 5e-14 Identities = 260/394 (66%), Gaps = 5/394 (1%) Strand=Plus/Plus Query 138187 CAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGTAAAT 138246 |||||||||| || ||||| || ||||| || || ||||||||||| ||||| || | | Sbjct 31116 CAATAGGACCGACACCAGGGCCACCACCACCGTGGGGAATACAGAAGGTCTTGTGGAGGT 31175 Query 138247 TTAGATGACATACATCTGCACC-ATAGTCACATGGTTTTGCTAGACCTACCTGTGCATTT 138305 | ||||| || ||||| || || ||| |||| || ||||| | ||| || || Sbjct 31176 TAAGATGGCAGACATCAGCGCCGATA-TCACCAGGAGAGCAAAGACCGATCTGGGCGTTC 31234 Query 138306 AGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATCTGT 138365 | || ||||| || | || || ||||||| | || ||||| | | || | || Sbjct 31235 ATGTTGGCACCGTCCATGTAGACGAGACCACCGTGCTCGTGAACAAGATCGCAGACTTGC 31294 Query 138366 CTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAGAGT 138425 | || | | ||||| |||||| || || || || |||| ||| ||| | ||| Sbjct 31295 TTAATCTCGGGCTCAAAGACACCAAAGGTGGAGGGGTAGGTAACCATGATAGCAGCGAGC 31354 Query 138426 TCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCCA-TCAT- 138483 ||| | | | ||| || || ||||| | ||||| | ||| ||| || | Sbjct 31355 TCATCAGCGTGCTTGACACACTTGGCCTTGAGATCCTCAATGTCCAGGTTACCAGTCTTG 31414 Query 138484 -CATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTAGTT 138542 | ||||||||||| || || ||||| || ||||| | || ||||| || || Sbjct 31415 CCGTCACACTTGACGGTGACGACCTTCATGCCAGCCATAGCGGCCGAGGCAGGGTTGGTA 31474 Query 138543 CCATGTGCTGACTCTGGTATCAGACATACATTTC 138576 || || || || | || ||||| || || |||| Sbjct 31475 CCGTGGGCAGAAACGGGGATCAGGCAAACCTTTC 31508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578994882584720