Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31]
486 sequences; 36,567,111 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq47 120 4e-21
seq389 113 6e-19
seq380 105 8e-17
seq323 104 3e-16
>seq47
Length=1673914
Score = 120 bits (132), Expect = 4e-21
Identities = 87/101 (86%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 1592192 AACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATC 1592251
||||||||||| |||||||| || ||||| |||| |||||| | || ||||||||||||
Sbjct 608630 AACTACCTCGATATCAAGCCCCTTCTCGACGTTGGATGCAAGACCGTCGCCAACATGATC 608571
Query 1592252 AAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292
||||||||| | |||||||| |||||||||||||| || ||
Sbjct 608570 AAGGGCAAGGCACCCGAGGAAATCCGCAAGACCTTCAATAT 608530
>seq389
Length=813516
Score = 113 bits (124), Expect = 6e-19
Identities = 205/300 (68%), Gaps = 0/300 (0%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| ||||| || || |||| ||| || || || |||||||| |||| ||||||||
Sbjct 461082 CTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACCGTTGGA 461023
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|| ||||| || || | ||| | ||| | ||| || | ||| ||| |||||
Sbjct 461022 AGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCGTTCAAGCC 460963
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|| || || ||| |||||| || | || || ||||| || |||||||| || ||
Sbjct 460962 AATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATACCATC 460903
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||| ||||||| || || || ||||| || || || || || | || ||
Sbjct 460902 AATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTGGAGTACC 460843
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||||| | ||||| | || ||||| |||| | |||||| || ||| ||
Sbjct 460842 GGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGTTGTATGT 460783
>seq380
Length=646993
Score = 105 bits (116), Expect = 8e-17
Identities = 174/250 (70%), Gaps = 1/250 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || | |||||| |||||| |||||||||||||| | || |||||
Sbjct 391914 GCCTTCTGGTAGTCAGCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATG 391973
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | |||||| ||| ||| ||||| | ||
Sbjct 391974 TTCTCCATGAAGTCGAAAGGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCAACG 392033
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| || || || ||||| || ||||||||||| ||||||| || |||||||||||
Sbjct 392034 AGGAGACGATCAGCGACGAATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGC 392093
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | ||| | | |||||| | ||| || ||||| ||| |||
Sbjct 392094 AGGGCACAAGGGAGAGCCTCAGTAAGAAACTCCTGCTCAATAGAAACGGCATCGGTGATA 392153
Query 868931 ATCTGCCTGG 868940
|| | |||||
Sbjct 392154 ATGT-CCTGG 392162
Score = 87.8 bits (96), Expect = 2e-11
Identities = 175/251 (70%), Gaps = 9/251 (4%)
Strand=Plus/Plus
Query 869216 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGC-CCG-AGA 869273
|| || ||||||||||| |||||||||||||| |||||| | || || || ||| ||
Sbjct 392265 AGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATG--GAAGCAAAGGCACCGCTGA 392322
Query 869274 AAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCT 869333
| ||||| ||||| ||||| ||||| | | || |||| || ||| || || | ||
Sbjct 392323 AGAAGATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAG--GTAGA-GTTCT 392379
Query 869334 CCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGA 869393
| | |||||| || ||||| || ||||| || | | | || | ||||| |
Sbjct 392380 TATCCTGGATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAA 392439
Query 869394 TGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGC 869452
|||| ||||||| || | | ||| |||||||||| ||||| ||||| |||||
Sbjct 392440 CGGCGTTGAAGAGGTATGTAC-GCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGG 392498
Query 869453 GAATAGGTCTC 869463
|| || || ||
Sbjct 392499 GAGTATGTTTC 392509
>seq323
Length=1534178
Score = 104 bits (114), Expect = 3e-16
Identities = 102/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
||||||| ||||| || || || ||||| ||||| | ||| | || |||||||||
Sbjct 282493 GACAGCACTGGCGGAACCGTCACCTGCGTCATCCGCAATGCGCCCTCTGGTCTCGGCGAG 282552
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|| ||||| |||||| | ||||| | ||||||||||||||| |||| ||||| ||| |
Sbjct 282553 CCCTGCTTCGACAAGCTGCAGGCCACCCTCGCCCACGCCATGATGTCCATCCCCGCCGTC 282612
Query 19167 AAGGGATTCGAG 19178
|||| ||||||
Sbjct 282613 AAGGCCTTCGAG 282624
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107099316564062
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |