Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31] 486 sequences; 36,567,111 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq389 179 4e-40 seq85 122 8e-23 seq58 111 2e-19 seq323 107 2e-18 >seq389 Length=813516 Score = 179 bits (198), Expect = 4e-40 Identities = 1117/1762 (63%), Gaps = 69/1762 (4%) Strand=Plus/Minus Query 148053 GACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGTCGCTTT 148109 ||||| ||| |||||||| || ||||||||||| ||||| | ||| |||||| Sbjct 462341 GACTGAGACTGATCAATGAAGGCACCACGGTCAGCAGCCATCTGCACAACCTGTCGCTGA 462282 Query 148110 ATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATG 148169 |||||||| | ||||||||||| |||||| | | || ||| | |||| Sbjct 462281 GAA---ATCTCCCACACAGTCTTGTACAGAGCCTTGATCTCGGCAGGGATGTTGGGGATG 462225 Query 148170 CGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTG 148229 ||| | || ||| | |||| || | || ||| | || | | || Sbjct 462224 TTCTGGATAGAACCGTTATCAGCAATGATGCGGTTCTTCATAGCATCGGACCAAAGACCC 462165 Query 148230 AGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACG 148289 | |||| || || | || || | | || || ||||| |||||||| || || || Sbjct 462164 ATGTCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAGGACT 462105 Query 148290 CGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGC 148349 || || | || | |||| || | || ||||| | ||||||||||| | ||||||| Sbjct 462104 CGGCGTTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCATTCGTTGTTGCCAAGAATCTGC 462045 Query 148350 GCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTT 148409 | ||| | || || ||||| || || ||||| |||||| | |||| || | || Sbjct 462044 GAGGTACTGGCGGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGTCTTG 461985 Query 148410 ATTTTGCGCTTCAGAGCCG--CCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGT 148467 | | | || ||| | |||||||||| || || || | || |||||||||| Sbjct 461984 ACAT--CCTCTCGGAGGGGTTCCCAGTCCCAAAGGTCAGAGGGCTTGACATTCCACATGT 461927 Query 148468 CGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCG 148527 || |||| ||||| || || ||| ||||| | | | | ||| || || | | Sbjct 461926 CGAACTGGAGAATACCCTCAGAGGCAGGGGAGCCCTTGAAGGTGGAGTAGGGACCTTCCT 461867 Query 148528 CCGCCGCCAGTT-CGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGC 148586 || || |||| | ||| || || || ||| ||| || |||||| |||||| Sbjct 461866 CCTTGGCGAGTTGCACAG-ACGTAGTAAGGGCAGCGTGGTAGATGGTCTCGAAGATTTGC 461808 Query 148587 CTGTTGAGC---AGCGCCGC-CGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGC 148642 |||| ||| | ||| | || | || | ||||| || || | ||| || Sbjct 461807 TTGTTCAGCTCACGAGCCTCAGGAGAC----TCAAAGGGCATGCGGAGGGCAAGAAAGGC 461752 Query 148643 GTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGC 148702 || || || || || || || | |||||||| ||||| |||||| | || || Sbjct 461751 ATCAGCGAGACCTTGCACACCAAGACCAATGGGTCGGTGACGCATGTTGCTGTTACGAGC 461692 Query 148703 GCTC-TCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCT 148761 ||| | || || ||||||||| |||||||||||||| | |||||| || || || | Sbjct 461691 -CTCTTGGACAGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAACAACTT 461633 Query 148762 TTGTAATTCTGCGCAGCAATTCAAAATCGTACTTGTCATCTAC------GATGCATCGGT 148815 || | | ||||| | || ||||| ||||| | ||| | | Sbjct 461632 GAGTGACCTCGTGCAGCTTCTTGAAGTCGTAGCAAGCATCTTCATAGTTGATAAAAGAGG 461573 Query 148816 TCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGA 148875 || | | ||||| || ||||| || || |||||| ||||||| ||| || | || Sbjct 461572 GCAGAGACAAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGA 461513 Query 148876 TCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGT 148935 |||| | |||||| ||| || | ||| || | ||||||||| || ||||||| | Sbjct 461512 TCTCAGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGAT 461453 Query 148936 TGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT-- 148993 |||| |||||||| |||||| | || || || || ||| | || | || Sbjct 461452 TGCAGTGATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGG 461393 Query 148994 -GAACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCT---CCT---GCT 149046 | ||| | || | ||| || |||| | | | |||||||| ||| || Sbjct 461392 CGTACCAA---AGTTTCTGAGC-----CTTGATAGAC-TTGCGACCCTTACCCTCTCTCT 461342 Query 149047 CGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCA 149104 |||| | ||| | ||| ||| || | || |||||||| || | || || ||||| Sbjct 461341 CGTACTTTTCGTACAGAGC--CTCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCA 461284 Query 149105 CTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATC 149164 | || ||||||||||| | ||| |||||| | || |||||||| || ||||| Sbjct 461283 TTCGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATC 461224 Query 149165 GGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGC--GCCCATG-TT 149221 || | ||| || || | | ||||| || || || | | || | || || || Sbjct 461223 AGGGATCCAAAGAGCTAAGAACAGGTCACGAGC---GCGGACCTCCTCCTTACCGTGATT 461167 Query 149222 GCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAG 149281 || || | || | ||| | ||| |||||||| || |||| ||| | |||| Sbjct 461166 CTTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAA 461107 Query 149282 CGCGCCCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCG 149338 || || |||||| || |||||||| |||| || | ||||||| ||||| || Sbjct 461106 GGCACCAGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACG 461047 Query 149339 AACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGC 149398 | ||| || | || || ||| ||| || || ||| | ||| | ||| || Sbjct 461046 CAGCATGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGC 460987 Query 149399 TCGCACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGC-AG 149456 || | | ||| |||| | ||| || || || ||| | ||| || || || | || Sbjct 460986 ACGGATTCGGTGGGCGTTCAAGCCAATACCACCAGCCAT-CTTGGAAATCATGGCACAAG 460928 Query 149457 TCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGC-AGAAAGCA 149515 || ||| || |||||| || || |||||||| |||||| ||| | || ||||| Sbjct 460927 TC-TTGAGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCAT-ATCAACAAGGAAGCA 460870 Query 149516 CGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGT-AA 149574 || | | || || | || ||||| ||| | |||||||| || || || || Sbjct 460869 TGATGAAAGCTGAGGCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAA 460810 Query 149575 AATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGA 149634 | || || | ||| | | ||| | ||| | || || || || || || || || Sbjct 460809 GAACTTGCTTG-ACATGAGGTTGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAGA 460751 Query 149635 TGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTT 149694 | || | ||||| ||||| | |||||||||||| ||||| || | |||| |||| | Sbjct 460750 TTCCAACAGCGACTCGCATGATCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATCT 460691 Query 149695 TGAGCAAGTA-GCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGG 149753 |||||||| | | | || || | ||||||| || ||||||| |||||||| Sbjct 460690 GTAGCAAGTATGATCTGGACAAG-GTTCGGAAGCCAAAATAGTTGTAGTTGAAGTCGCGA 460632 Query 149754 CCGTGGTCAATGGCGGCGTCGA 149775 | | | |||| || | ||||| Sbjct 460631 TCATAGACAATCGCTGAGTCGA 460610 >seq85 Length=135120 Score = 122 bits (134), Expect = 8e-23 Identities = 158/215 (73%), Gaps = 9/215 (4%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || ||||| |||| || ||| | | | |||||||| Sbjct 93976 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCGAG 94034 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC--GG-- 133569 |||||| || || | || || ||||||||||| || ||||| || |||||||| || Sbjct 94035 CTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGAT 94094 Query 133570 ---TGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGG 133626 |||||| ||||| | |||| ||||||| | |||||| || | ||||| | Sbjct 94095 NNTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCG 94154 Query 133627 TTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 | || || || || || || ||||||||||||||| Sbjct 94155 TCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATG 94189 >seq58 Length=162708 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||||||| | ||| | | | ||||||||||||||||| Sbjct 44105 GTCGACTCCTTCTGAATGTTGTAATCGGAGAGGGTGCGGCCA-TCCTCGAGCTGCTTGCC 44163 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | |||||||| || |||||||| |||||||| |||||| ||| Sbjct 44164 GGCGAAAATCAATCGCTGCTGATCAGGAGGGAT--NNTCCTTGTCCTGGATCTTGGACTT 44221 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||||| | ||| || |||| ||||| ||| ||||| || || || Sbjct 44222 CACATTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGT 44281 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 44282 CTTGACGAAGATTTGCAT 44299 Score = 105 bits (116), Expect = 6e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| |||| | |||||||| || |||||||| || ||||| Sbjct 43864 GTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTT 43923 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | ||||||| | ||| || || | ||||| Sbjct 43924 GTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCGACCTCAAGGGTGAT 43983 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGA 133650 ||| |||||||||| || || |||| Sbjct 43984 GGTCTTGCCGGTCAAGGTCTTGACGA 44009 >seq323 Length=1534178 Score = 107 bits (118), Expect = 2e-18 Identities = 119/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| ||| | || | |||||||| || || |||||||| |||||| Sbjct 1260260 TCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTG 1260201 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | ||||| | | ||| || |||| ||||| | Sbjct 1260200 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATG 1260141 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGC 133663 || ||||| ||||| || || |||||| ||| ||||| Sbjct 1260140 GTCTTGCCCGTCAGGGTCTTCACGAAA--CTGGATGGC 1260105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483417863218640