Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31]
486 sequences; 36,567,111 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq380 152 7e-32
seq389 123 3e-23
>seq380
Length=646993
Score = 152 bits (168), Expect = 7e-32
Identities = 373/559 (67%), Gaps = 10/559 (2%)
Strand=Plus/Plus
Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676
||||| ||||| || || |||||||| | | ||| | ||||||||||| | ||
Sbjct 392208 CAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCAGA 392267
Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736
|||||||| || |||||||| |||||||| || |||| |||||| | || ||||||
Sbjct 392268 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAG 392327
Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TATCATTATGT 39793
|| || || || || ||||| |||||||| | || || | | | | | || ||
Sbjct 392328 ATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCCTGG 392387
Query 39794 ATCCA-CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852
||||| | || |||||||| || ||||| | ||||| || || || | || ||
Sbjct 392388 ATCCATCGGATG-GCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTT 392446
Query 39853 AAAGAGATAATGT-TTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911
||||| | |||| | || || || | || ||||| || | || ||
Sbjct 392447 GAAGAGGT-ATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATG 392505
Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971
|||| || |||||||| || ||| ||||| || || || || |||| || || | |
Sbjct 392506 TTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGA 392565
Query 39972 TTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGG 40031
| || ||||| | |||| || | | ||| ||||| || || || || || |
Sbjct 392566 TCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGCAG 392625
Query 40032 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT---TTATTCC 40088
| || || || | | || || || |||| || || | |||||| || ||||
Sbjct 392626 CGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTTCC 392685
Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148
|||| | || ||| || || | ||| | || ||||||||||| || || ||||||||||
Sbjct 392686 AGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCT 392745
Query 40149 TTTTGTACATGTTCCATAT 40167
| |||||||| | ||| ||
Sbjct 392746 TCTTGTACATTTGCCAGAT 392764
>seq389
Length=813516
Score = 123 bits (136), Expect = 3e-23
Identities = 589/925 (64%), Gaps = 16/925 (2%)
Strand=Plus/Minus
Query 69277 GATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA-TATTGTATTATCTCTGTACA 69335
|| || || || ||||| || ||||||| || ||| |||| || ||||| || ||
Sbjct 461561 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGC-GCAGTATTCAATGATCTCAGTGCA 461503
Query 69336 TAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTC 69395
|| || | | ||| || || || || | || |||||||| || ||| ||
Sbjct 461502 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAGTGATC 461443
Query 69396 CTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAAC 69455
|||||| || || || || | || || || |||| | || | ||| | | |||||
Sbjct 461442 CTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAG 461383
Query 69456 GACCCTAGCATTTATTACGGTCTTGTAACGCTT---CTCTTTTTCATATTGT--GTATAT 69510
| ||| || || | |||| || ||| |||| | || || | | ||| |
Sbjct 461382 TTTCTGAGCCTTGATA---GACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAG 461326
Query 69511 AGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATC 69570
|||| || ||||| || || | ||| | | ||||| ||||| || || |||||
Sbjct 461325 AGCC--TCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATG 461268
Query 69571 AATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCT 69630
| | ||| | | | || || || ||||| || ||||| || ||||||||||||
Sbjct 461267 AGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCT 461208
Query 69631 ATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAAC 69690
| || || || | | | || || || || ||| ||| ||||| || |||
Sbjct 461207 AAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCAAGGAAC 461148
Query 69691 TCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTT 69750
|| | | || | ||||||||||| || || || || | | | || ||||| || ||
Sbjct 461147 TCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTA 461088
Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810
|| ||||| || | ||| | |||||||| || | || | |||||| |||| |||||
Sbjct 461087 CCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACCG 461028
Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870
|| || ||||||| || || | || ||| || | || || || | | | |
Sbjct 461027 TTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT-TCGGTGGGCGTT 460969
Query 69871 -AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| || || || || ||||| || || || | |||||| || | || || || ||
Sbjct 460968 CAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGAT 460909
Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTAT 69989
||| || ||||| || || |||| | || ||| || || || | ||| | |||
Sbjct 460908 ACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTGG 460849
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
||| || || || ||||| || || ||| |||||||| | || || | || ||
Sbjct 460848 AGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGTT 460789
Query 70050 GTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCA 70108
|||||| || | | || ||||| ||| | ||||| | ||||| ||||| |
Sbjct 460788 GTATGTCTCCAAGACACGCTCAATATCGTCACCCCAG-ATTCCAACAGCGACTCGCATGA 460730
Query 70109 ACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCA 70168
||||||||| || || || | |||| | || | | || ||||||| | ||
Sbjct 460729 TCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATCTGTAGCAAGTATGATCTGGACA 460670
Query 70169 GAGTTTTAAACCCAAAATAGTTGTA 70193
||| || ||||||||||||||
Sbjct 460669 AGGTTCGGAAGCCAAAATAGTTGTA 460645
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686904627029040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |