Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31]
486 sequences; 36,567,111 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq394 141 3e-28
seq404 114 4e-20
seq58 107 6e-18
seq85 91.5 4e-13
>seq394
Length=199350
Score = 141 bits (156), Expect = 3e-28
Identities = 437/671 (65%), Gaps = 15/671 (2%)
Strand=Plus/Minus
Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321
|| || || || || || || |||||| |||| || || |||| ||| | || |||||
Sbjct 56289 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 56230
Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381
|| |||||| ||||||||||| | || || || || | || || || | || ||
Sbjct 56229 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACC 56170
Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435
|| || || || |||||| | || || | ||||| | |||| || ||
Sbjct 56169 GTCTTCGACGCCAAGCGATTGATCGGCCGCAAGTTCGCCGATGCTGAGG--TC----CAG 56116
Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495
| ||| | || || || || || || | | | | ||| | || || || ||
Sbjct 56115 GCCGATATGAAGCACTTCCCCTTCACAATCAT-CGACAAGGC--TGGCAAGCCCGCCATC 56059
Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555
|||||||| | || ||||| | || || ||||| || || || | ||| |
Sbjct 56058 GAGGTTGAGTTCAAGGGTGAGAAGAAGACCTTCACCCCCGAGGAGATCTCCGCCATGATC 55999
Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615
| || ||| || | |||||| | || | ||||| || || | | || |||
Sbjct 55998 CTCACCAAGATGCGTGAGACTGCTGAGTCTTACCTCGGTGAGACTGTCAACAACGCCGTT 55939
Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675
| || || || ||||| || || || | |||||| || || || ||||| || |
Sbjct 55938 GTCACCGTCCCTGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCCGGTCTC 55879
Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735
|| || || | || ||||| |||| || || || || || ||||| || ||||| ||
Sbjct 55878 ATCGCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCTGCCGCCATTGCCTAC 55819
Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795
|| ||||| || | | ||| || || | || || || ||| | |||||||||
Sbjct 55818 GGTCTTGACAAGAAGGTTGAGGGTGAGCGCAACGTCCTCATCTTCGATCTTGGTGGTGGT 55759
Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855
|| || ||||| || || || || |||| ||||| || || || || || | |||||
Sbjct 55758 ACCTTCGATGTCTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCC 55699
Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915
||||| || || | ||||| |||||||| || || ||||||||| || || |||||
Sbjct 55698 GGTGACACTCACTTGGGTGGTGAAGATTTCGACAACCGTCTCGTTAACCACTTCGTTAAC 55639
Query 349916 GAATTTAAGCG 349926
|| || |||||
Sbjct 55638 GAGTTCAAGCG 55628
>seq404
Length=240026
Score = 114 bits (126), Expect = 4e-20
Identities = 179/255 (70%), Gaps = 6/255 (2%)
Strand=Plus/Minus
Query 378222 TCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACG 378281
|||||| ||| |||||||||| | ||| || || ||||||||||| | ||| | ||
Sbjct 130193 TCGTCGCTGAATGTAACCAGTTTCAGCAGTCTTGACCGCAGTATCAATGAGACCTTCTCG 130134
Query 378282 ACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTC 378341
|||| |||| || |||||||| || || |||| ||||| |||| | | || ||||
Sbjct 130133 ACCAGCCATGGCGTGGAAGAAAAACTCGCTAGGGGTAAGACCACGTAGGTAAGAGTTCTC 130074
Query 378342 AATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATT 378401
| || || | || | || |||| ||||| || || ||||||| | |||||||
Sbjct 130073 GACGAAACCACGGGCTTCGGGAGAATAATCATCCTTGGTGAAATGAGGCAGAGTACGATA 130014
Query 378402 CTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTGTTGAC---CAAGTGCAGAAAC 378458
|| || ||| | ||||| || ||||| || || | ||||||| |||| ||||
Sbjct 130013 CTTGAAACCAAAGGGAATGCGCTTTCCTTCGACGATTTGTTGACCGACAAGCGCAG---T 129957
Query 378459 CATTTGAGCAATATT 378473
|||||| | ||| ||
Sbjct 129956 CATTTGCGAAATGTT 129942
Score = 87.8 bits (96), Expect = 5e-12
Identities = 102/137 (74%), Gaps = 3/137 (2%)
Strand=Plus/Minus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
|| |||||||| | || || ||| || || | |||||||| || ||||| || ||
Sbjct 130975 CGAGGCACACCCAGGGTGACGTTC---TTGGAAGACACACCAGCGAAATGGAAGGTGTTC 130919
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
|| || | ||||| | ||||||||||| ||||| || || | ||| |||||||||||
Sbjct 130918 AGTGTCATCTGAGTGGCAGGCTCACCAATGGACTGGGCAGCCAAAACACCAACCATTTCA 130859
Query 377578 CCAGGATTGACAATAGC 377594
||||| ||||| | |||
Sbjct 130858 CCAGGGTTGACGAAAGC 130842
>seq58
Length=162708
Score = 107 bits (118), Expect = 6e-18
Identities = 165/235 (70%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | || || || || ||||| ||||| || ||||| || |
Sbjct 44067 TTTGCATACCACCACGAAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGT 44126
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
|||| || | || || ||||| || || || || || || || || | || |||||||
Sbjct 44127 AATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGAT 44186
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
||||||| || || || ||||| || || | || ||||| || || | || ||||
Sbjct 44187 CAGGAGGGAT--NNTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGATG 44244
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || || | ||||| || || || || || || || || |||||
Sbjct 44245 ACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 44299
Score = 91.5 bits (100), Expect = 4e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570
|||||||| | | || || || ||||| || || || || || || ||||| || ||
Sbjct 43793 CCACCACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTATAGTCGGAG 43852
Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630
| ||||| || || || || || || || || || || | || ||||||||||||||
Sbjct 43853 AGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGG 43912
Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690
|| || || || ||||| || || | || || || || || | || |||| || ||
Sbjct 43913 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCGACC 43972
Query 140691 TCAAGTGTAACTGTCTTTCCGGT 140713
||||| || | ||||| |||||
Sbjct 43973 TCAAGGGTGATGGTCTTGCCGGT 43995
Score = 86.0 bits (94), Expect = 2e-11
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 140613 CGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATC 140672
|| |||||||||||||| || || || || |||||||| || | || || || || ||
Sbjct 44433 CGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATA 44492
Query 140673 GAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATC 140732
| |||||||| ||||| || || |||| ||||| ||||| | || || || || |||
Sbjct 44493 GTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTGACGAAGATC 44552
Query 140733 TGCAT 140737
|||||
Sbjct 44553 TGCAT 44557
>seq85
Length=135120
Score = 91.5 bits (100), Expect = 4e-13
Identities = 162/238 (68%), Gaps = 7/238 (3%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | ||||| || ||||| || || || || || ||
Sbjct 93951 CATACCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 94010
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| || || ||||| || || || || ||||||||||| || || ||||| || ||
Sbjct 94011 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGG 94070
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-------TTTACATTATCAATCGAATCAG 140679
|| || || || || ||||| || | | | || || || ||||| | || |
Sbjct 94071 GGGGATACCCTCCTTGTCCTGGATNNTGGATCTTGGACTTGACGTTGTCAATGGTGTCGG 94130
Query 140680 ATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| | || || ||||| || | ||||| || || || || || || |||||||||||
Sbjct 94131 AAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 94188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515244964700258
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |