Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31] 486 sequences; 36,567,111 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq394 141 3e-28 seq404 114 4e-20 seq58 107 6e-18 seq85 91.5 4e-13 >seq394 Length=199350 Score = 141 bits (156), Expect = 3e-28 Identities = 437/671 (65%), Gaps = 15/671 (2%) Strand=Plus/Minus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| |||| || || |||| ||| | || ||||| Sbjct 56289 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 56230 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| ||||||||||| | || || || || | || || || | || || Sbjct 56229 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACC 56170 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435 || || || || |||||| | || || | ||||| | |||| || || Sbjct 56169 GTCTTCGACGCCAAGCGATTGATCGGCCGCAAGTTCGCCGATGCTGAGG--TC----CAG 56116 Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495 | ||| | || || || || || || | | | | ||| | || || || || Sbjct 56115 GCCGATATGAAGCACTTCCCCTTCACAATCAT-CGACAAGGC--TGGCAAGCCCGCCATC 56059 Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555 |||||||| | || ||||| | || || ||||| || || || | ||| | Sbjct 56058 GAGGTTGAGTTCAAGGGTGAGAAGAAGACCTTCACCCCCGAGGAGATCTCCGCCATGATC 55999 Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615 | || ||| || | |||||| | || | ||||| || || | | || ||| Sbjct 55998 CTCACCAAGATGCGTGAGACTGCTGAGTCTTACCTCGGTGAGACTGTCAACAACGCCGTT 55939 Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675 | || || || ||||| || || || | |||||| || || || ||||| || | Sbjct 55938 GTCACCGTCCCTGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCCGGTCTC 55879 Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735 || || || | || ||||| |||| || || || || || ||||| || ||||| || Sbjct 55878 ATCGCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCTGCCGCCATTGCCTAC 55819 Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || ||||| || | | ||| || || | || || || ||| | ||||||||| Sbjct 55818 GGTCTTGACAAGAAGGTTGAGGGTGAGCGCAACGTCCTCATCTTCGATCTTGGTGGTGGT 55759 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 || || ||||| || || || || |||| ||||| || || || || || | ||||| Sbjct 55758 ACCTTCGATGTCTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCC 55699 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 ||||| || || | ||||| |||||||| || || ||||||||| || || ||||| Sbjct 55698 GGTGACACTCACTTGGGTGGTGAAGATTTCGACAACCGTCTCGTTAACCACTTCGTTAAC 55639 Query 349916 GAATTTAAGCG 349926 || || ||||| Sbjct 55638 GAGTTCAAGCG 55628 >seq404 Length=240026 Score = 114 bits (126), Expect = 4e-20 Identities = 179/255 (70%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 378222 TCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACG 378281 |||||| ||| |||||||||| | ||| || || ||||||||||| | ||| | || Sbjct 130193 TCGTCGCTGAATGTAACCAGTTTCAGCAGTCTTGACCGCAGTATCAATGAGACCTTCTCG 130134 Query 378282 ACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTC 378341 |||| |||| || |||||||| || || |||| ||||| |||| | | || |||| Sbjct 130133 ACCAGCCATGGCGTGGAAGAAAAACTCGCTAGGGGTAAGACCACGTAGGTAAGAGTTCTC 130074 Query 378342 AATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATT 378401 | || || | || | || |||| ||||| || || ||||||| | ||||||| Sbjct 130073 GACGAAACCACGGGCTTCGGGAGAATAATCATCCTTGGTGAAATGAGGCAGAGTACGATA 130014 Query 378402 CTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTGTTGAC---CAAGTGCAGAAAC 378458 || || ||| | ||||| || ||||| || || | ||||||| |||| |||| Sbjct 130013 CTTGAAACCAAAGGGAATGCGCTTTCCTTCGACGATTTGTTGACCGACAAGCGCAG---T 129957 Query 378459 CATTTGAGCAATATT 378473 |||||| | ||| || Sbjct 129956 CATTTGCGAAATGTT 129942 Score = 87.8 bits (96), Expect = 5e-12 Identities = 102/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || |||||||| | || || ||| || || | |||||||| || ||||| || || Sbjct 130975 CGAGGCACACCCAGGGTGACGTTC---TTGGAAGACACACCAGCGAAATGGAAGGTGTTC 130919 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | ||||| | ||||||||||| ||||| || || | ||| ||||||||||| Sbjct 130918 AGTGTCATCTGAGTGGCAGGCTCACCAATGGACTGGGCAGCCAAAACACCAACCATTTCA 130859 Query 377578 CCAGGATTGACAATAGC 377594 ||||| ||||| | ||| Sbjct 130858 CCAGGGTTGACGAAAGC 130842 >seq58 Length=162708 Score = 107 bits (118), Expect = 6e-18 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || || || ||||| ||||| || ||||| || | Sbjct 44067 TTTGCATACCACCACGAAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGT 44126 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || | || || ||||| || || || || || || || || | || ||||||| Sbjct 44127 AATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGAT 44186 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||| || || || ||||| || || | || ||||| || || | || |||| Sbjct 44187 CAGGAGGGAT--NNTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGATG 44244 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| || || || || || || || || ||||| Sbjct 44245 ACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 44299 Score = 91.5 bits (100), Expect = 4e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || || ||||| || || || || || || ||||| || || Sbjct 43793 CCACCACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTATAGTCGGAG 43852 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | ||||| || || || || || || || || || || | || |||||||||||||| Sbjct 43853 AGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGG 43912 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || ||||| || || | || || || || || | || |||| || || Sbjct 43913 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCGACC 43972 Query 140691 TCAAGTGTAACTGTCTTTCCGGT 140713 ||||| || | ||||| ||||| Sbjct 43973 TCAAGGGTGATGGTCTTGCCGGT 43995 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 140613 CGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATC 140672 || |||||||||||||| || || || || |||||||| || | || || || || || Sbjct 44433 CGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATA 44492 Query 140673 GAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATC 140732 | |||||||| ||||| || || |||| ||||| ||||| | || || || || ||| Sbjct 44493 GTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTGACGAAGATC 44552 Query 140733 TGCAT 140737 ||||| Sbjct 44553 TGCAT 44557 >seq85 Length=135120 Score = 91.5 bits (100), Expect = 4e-13 Identities = 162/238 (68%), Gaps = 7/238 (3%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | ||||| || ||||| || || || || || || Sbjct 93951 CATACCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 94010 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| || || || || ||||||||||| || || ||||| || || Sbjct 94011 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGG 94070 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-------TTTACATTATCAATCGAATCAG 140679 || || || || || ||||| || | | | || || || ||||| | || | Sbjct 94071 GGGGATACCCTCCTTGTCCTGGATNNTGGATCTTGGACTTGACGTTGTCAATGGTGTCGG 94130 Query 140680 ATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | | || || ||||| || | ||||| || || || || || || ||||||||||| Sbjct 94131 AAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 94188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515244964700258