Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31]
486 sequences; 36,567,111 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq389 223 4e-53
seq411 147 2e-30
>seq389
Length=813516
Score = 223 bits (246), Expect = 4e-53
Identities = 418/608 (69%), Gaps = 10/608 (2%)
Strand=Plus/Plus
Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239
|| ||| || | ||||||| ||||| | || ||| |||||||| |||||||
Sbjct 460717 CCGCAGCATATGATCATGCGAGTCGCTGTTGGAATCTGGGGTGACGATATTGAGCGTGTC 460776
Query 53240 CGTGAGACGTACGACTTAATGAGCCAA--AAGTACTTTACGCACGCCACGCCAACCCTGT 53297
||||| ||| || | ||| ||| |||| ||| || || || | || || | |
Sbjct 460777 TTGGAGACATACAACCTCATGT--CAAGCAAGTTCTTCACTCATGCAAGCCCCACTTTAT 460834
Query 53298 TCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATG 53357
||||||| ||||| || |||||| | || |||||||| || | |||||||| |
Sbjct 460835 TCAACGCCGGTACTCCACAGCCTCAGCTTTCATCATGCTTCCTTGTTGATATGAAGGAGG 460894
Query 53358 ACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGG 53417
|| || || || |||||||| || |||||| |||||| || |||||| | | |
Sbjct 460895 ACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTG 460954
Query 53418 GTGGTATCGGTATCCACTGCT--CGAACGTCCGTGCGAACGGCACACCAATCAAGGGGAC 53475
||||||| || | || | |||| ||||||| | ||| | ||| || ||
Sbjct 460955 GTGGTATTGGCTTGAACGCCCACCGAA--TCCGTGCCACTGGCTCTTACATCGCCGGTAC 461012
Query 53476 GAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535
|| || || | || ||||| || ||||| || || ||||||||||| || || ||
Sbjct 461013 CAATGGTACTTCCAACGGTATCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTA 461072
Query 53536 CGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595
||| ||||||||||| ||||| || | |||||||||||||| || || |||||
Sbjct 461073 CGTTGACCAGGGTGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAACCATGGCA 461132
Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655
||||||| | | ||||| || || || || |||||| ||| | || ||| | |||
Sbjct 461133 CGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAGGAGGAGGTCCGCGC 461192
Query 53656 CCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715
||||||||||| |||||| ||||| || || || |||||| | || |||| |
Sbjct 461193 TCGTGACCTGTTCTTAGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGAGAAA 461252
Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTG 53774
|| || ||| || |||||||| ||||| ||||| |||| | | | || ||||||||
Sbjct 461253 CGGCGAATGGACTCTCATGTGCCCTAACGAATGCCCTGGCCTTGCTGACTG-CTACGGTG 461311
Query 53775 AGGAGTTT 53782
| || |||
Sbjct 461312 ACGAATTT 461319
Score = 91.5 bits (100), Expect = 2e-13
Identities = 140/197 (71%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAG-AAGAGTCTGATTGACATGAGT 55786
|||||| | ||| ||| |||||||||||| | ||| | || || | | ||| |
Sbjct 462248 TCAAGGCTCTGTACAAGACTGTGTGGGAGATTTCTCAGCGACAGGTTG-TGCAGATGGCT 462306
Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846
||||| |||||||| | ||| || ||||| |||||||| ||||| |||| || | |||
Sbjct 462307 GCTGACCGTGGTGCCTTCATTGATCAGTCTCAGTCTCTCAACATTCACATGAAGGACCCT 462366
Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906
| ||| |||| | | | |||||||| || |||||| || |||||||| ||
Sbjct 462367 ACCATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTCAAGACTGGC 462426
Query 55907 ATGTACTATCTGCGGAC 55923
|||||||| || || ||
Sbjct 462427 ATGTACTACCTCCGTAC 462443
>seq411
Length=681174
Score = 147 bits (162), Expect = 2e-30
Identities = 191/264 (72%), Gaps = 0/264 (0%)
Strand=Plus/Minus
Query 117298 TAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACC 117357
||| || |||||| ||||||||| || |||||||| ||||| ||||| || | |||
Sbjct 185531 TAGTCGGGTGAAAGTGTAACGAGGACTGGCAGCATCAGAACCACCTGCAAGTCGAGAACC 185472
Query 117358 GAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAA 117417
||| | |||||| || |||| | ||| | |||||| | |||||| ||||| ||||| |
Sbjct 185471 GAAGTTTCCACTGGGTTCCAGGCAGTTGATGTTGTTCGAGCCCACGAAGTTCTGAGCAAG 185412
Query 117418 GTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCAC 117477
| | ||| || ||| || | ||||| ||||| || |||||||| || | |||
Sbjct 185411 GCCAATAATGGTCTGTTGAAGTGACTGTTCACCGTGGTGGTATGCCGTCTGTTCGGACAC 185352
Query 117478 GTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATA 117537
|| || |||| | | | |||||| ||||| ||| ||| |||||| ||| || ||
Sbjct 185351 ATAACCTGCCAATTCAACGACCTTCTTGTCTTTGATCAAGTTTCTCTTGAAGCACGCGTA 185292
Query 117538 AATCACCTTGCGCTGACTTGGCTT 117561
|| ||||||||||||| |||||
Sbjct 185291 GATGACCTTGCGCTGACCGGGCTT 185268
Score = 120 bits (132), Expect = 3e-22
Identities = 206/299 (69%), Gaps = 0/299 (0%)
Strand=Plus/Minus
Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085
|| ||||| |||| || | ||||| ||||| |||||||| || || | || ||
Sbjct 185527 CGGGTGAAAGTGTAACGAGGACTGGCAGCATCAGAACCACCTGCAAGTCGAGAACCGAAG 185468
Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145
| |||| ||| || ||| ||||| |||||| | ||||||||| |||||||| |
Sbjct 185467 TTTCCACTGGGTTCCAGGCAGTTGATGTTGTTCGAGCCCACGAAGTTCTGAGCAAGGCCA 185408
Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205
| ||| || || || | |||||||||||| || |||||||| || | | ||
Sbjct 185407 ATAATGGTCTGTTGAAGTGACTGTTCACCGTGGTGGTATGCCGTCTGTTCGGACACATAA 185348
Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265
|| ||||| | | |||||| |||| | ||| ||| |||||| || ||||| ||
Sbjct 185347 CCTGCCAATTCAACGACCTTCTTGTCTTTGATCAAGTTTCTCTTGAAGCACGCGTAGATG 185288
Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324
||||||||||| || || || ||||||| || ||||| || ||| || ||||
Sbjct 185287 ACCTTGCGCTGACCGGGCTTGAATCCGTCCAGAACAGATGGAATAGATCGCATGTTGTC 185229
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547212675662800
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