Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31]
486 sequences; 36,567,111 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq58 125 2e-23
seq85 123 6e-23
seq323 111 4e-19
seq389 95.1 3e-14
>seq58
Length=162708
Score = 125 bits (138), Expect = 2e-23
Identities = 161/222 (73%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | ||||| ||||||||||| || || || || | |||||||||| | ||
Sbjct 44080 ACGAAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCGGAGAGGGT 44139
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || |||||||| || ||||| || | ||| || || || || || ||
Sbjct 44140 GCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGAT--N 44197
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||||||| ||||||||||| || | || || || |
Sbjct 44198 NTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCGACCTCGAG 44257
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||||||| || | || || | ||| | ||||||
Sbjct 44258 GGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 44299
>seq85
Length=135120
Score = 123 bits (136), Expect = 6e-23
Identities = 165/229 (72%), Gaps = 7/229 (3%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | ||||| | ||| || ||||| || || |||| ||||| ||| || ||
Sbjct 93960 ACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGT 94019
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || |||||||| ||||| ||||||||||| || ||||| || || |||||
Sbjct 94020 GCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACC 94079
Query 225612 TTCCTTGTCTTGGATCTT-----TTG--CTTCACAGCTTCGATGGTGTCTGAGGTTTCCA 225664
|||||||| ||||| | ||| ||| || || |||||||| || | ||||
Sbjct 94080 CTCCTTGTCCTGGATNNTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCA 94139
Query 225665 CGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
| || | ||||||||||| ||||| | || || | ||| | |||||
Sbjct 94140 CCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 94188
>seq323
Length=1534178
Score = 111 bits (122), Expect = 4e-19
Identities = 132/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| |||| | |||| ||||| || |||||||| || ||||||||
Sbjct 1260293 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 1260234
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
| ||| || || || || || || || |||||||| |||||||| ||| ||| |||
Sbjct 1260233 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1260174
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704
|||||||| || | || || || | ||||| ||||||||||||| || || | |||
Sbjct 1260173 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1260115
>seq389
Length=813516
Score = 95.1 bits (104), Expect = 3e-14
Identities = 168/245 (69%), Gaps = 0/245 (0%)
Strand=Plus/Minus
Query 193527 TCTTTGTAGACGATGAAGGGCATGCCCACCTCCGCTTGAGCGACGAGAATGTGATGCCAA 193586
|| ||||||| ||||| || | || ||| | || || | |||||| | ||||
Sbjct 461444 TCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAA 461385
Query 193587 AGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTTCCTTCCCTCTCGTACTTTTCGTACAGT 193646
|||| ||||| || | | | | | |||| || || ||||||||||||||||||||
Sbjct 461384 AGTTTCTGAGCCTTGATAGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGA 461325
Query 193647 TCCTCAAAATCTTGTCCGTAGATTTCGTCGAGACCGGGAGCTTCCTTTGGGCAAAAGAGA 193706
||||||| || | |||||| || | || || || ||| || ||||| | ||||
Sbjct 461324 GCCTCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATGAGA 461265
Query 193707 CTCCAATCTCCATCACTTTCCACCCTCTTCATGAAGAGGTCAGATGTCCAAATGGCGTAG 193766
|||| || || | || || || | ||||||||| || |||| |||||| || ||
Sbjct 461264 GTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCTAAG 461205
Query 193767 AAAAG 193771
|| ||
Sbjct 461204 AACAG 461200
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192523774257284
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |