Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31] 486 sequences; 36,567,111 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq58 152 1e-31 seq323 147 5e-30 seq85 147 5e-30 seq380 116 8e-21 seq1 86.0 1e-11 >seq58 Length=162708 Score = 152 bits (168), Expect = 1e-31 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| ||||| || | || ||| || |||||||| ||||| | Sbjct 43793 CCACCACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTATAGTCGGAG 43852 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || ||||| || || || ||||| || ||||| || || || ||| || Sbjct 43853 AGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGG 43912 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| |||||||| | || ||| | ||||||||||| || | ||||| Sbjct 43913 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCGACC 43972 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 || || ||||| ||||| || ||||| ||||| |||| Sbjct 43973 TCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGA 44009 Score = 131 bits (144), Expect = 4e-25 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | || || || || |||||||| || | Sbjct 44074 ACCACCACGAAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCGGA 44133 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || ||||| || ||||| || || || ||| || Sbjct 44134 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGG 44193 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| |||||||| | || || | ||||| ||||| || | ||||| Sbjct 44194 GAT--NNTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCGAC 44251 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 44252 CTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 44299 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || || ||| || || ||||||||||| || ||||| | || ||| | ||| Sbjct 44430 AATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCG 44489 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 ||||| || || | || || ||||| || || ||||| || ||||| ||||| ||||| Sbjct 44490 ATAGTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTGACGAAG 44549 Query 283092 ATCTGCAT 283099 |||||||| Sbjct 44550 ATCTGCAT 44557 >seq323 Length=1534178 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || || ||||||||||| || || || ||||| |||||| Sbjct 1260293 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 1260234 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || || || || || ||||||||||| |||||||| | || || | ||| Sbjct 1260233 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1260174 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||||| ||||| ||||| ||||| ||||| ||||||| ||||| ||||| Sbjct 1260173 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1260115 >seq85 Length=135120 Score = 147 bits (162), Expect = 5e-30 Identities = 173/235 (74%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| || | ||| || || |||||||||||||| Sbjct 93954 ACCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 94013 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || |||||||| | || || ||||| || Sbjct 94014 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGG 94073 Query 282992 AATACCCTCCTTGTC-------TTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAG 283044 |||||||||||||| |||||||| | || ||| | || || ||||| |||| Sbjct 94074 GATACCCTCCTTGTCCTGGATNNTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAG 94133 Query 283045 CTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||||||||| ||||| | ||||| ||||| |||||||| Sbjct 94134 ACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 94188 >seq380 Length=646993 Score = 116 bits (128), Expect = 8e-21 Identities = 172/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 230167 TCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTA 230226 |||| || | ||| | | ||| ||||||| || || ||| | ||||| || Sbjct 392151 TCACCGATGCCGTTTCTATTGAGCAGGAGTTTCTTACTGAGGCTCTCCCTTGTGCCCTGC 392092 Query 230227 TCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCG 230286 |||||||||| | | |||||| ||| || ||||||||||| ||||||||| | ||| Sbjct 392091 TCGGCATGAACTCCAACCTCATGAAGCAGTACATCGAATTCGTCGCTGATCGTCTCCTCG 392032 Query 230287 TGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCA 230346 | || || || ||||||| ||||| || |||| ||||| |||| || |||||| || Sbjct 392031 TTGCTCTCGGCAACGAGAAGGTGTACAAGTCCACCAACCCTTTCGACTTCATGGAGAACA 391972 Query 230347 TTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCG 230406 | || || || || || ||||||||||| ||||| || || || || | | ||| Sbjct 391971 TCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTTGCTGACTACCAGAAGGCCG 391912 Query 230407 GTGT 230410 |||| Sbjct 391911 GTGT 391908 >seq1 Length=546063 Score = 86.0 bits (94), Expect = 1e-11 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 315651 GTGACTAATCACCACCACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAG 315710 |||| |||| | | || ||||| |||| ||||| || |||| | | |||||||| Sbjct 417550 GTGAGTAATGATGATGACACCACCCTCGAACTTCTTCAGGGCCTTGGAAAGAGCACCGAG 417491 Query 315711 ACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCA 315770 | || ||||| | | ||||||| ||||| ||||||||||| | |||||| | ||||| Sbjct 417490 AGAGTCACGGTCAAGATAGTTGGTAGGCTCGTCAAGAACGATAAGATGGGGTCGCTGCCA 417431 Query 315771 TAGAGC-GGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAG 315829 ||||| ||| | | || ||| | || ||||| ||||| ||||| || |||| Sbjct 417430 -AGAGCAAGCGGCAAGGACAGTCTTGACACGCTGACCACCGGACAGACCACGCATACGAG 417372 Query 315830 AATGAG 315835 | |||| Sbjct 417371 AGTGAG 417366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046732682085844