Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31]
486 sequences; 36,567,111 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq58 132 3e-26
seq85 129 4e-25
seq323 113 3e-20
>seq58
Length=162708
Score = 132 bits (146), Expect = 3e-26
Identities = 155/209 (74%), Gaps = 2/209 (1%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||| || || |||||| || ||||||||||||| ||| ||| | || ||
Sbjct 44093 ACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCGGAGAGGGTGCGGCCATCCTCG 44152
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||| || ||||| ||||||||||| | ||| | ||||| |||
Sbjct 44153 AGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGG--GATNNTCCTTGTCCTGG 44210
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||||| | | |||||||||| || || ||||| | || || |||||
Sbjct 44211 ATCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTG 44270
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||||||||| ||||||||||||||
Sbjct 44271 CCTGTGAGGGTCTTGACGAAGATTTGCAT 44299
Score = 111 bits (122), Expect = 1e-19
Identities = 144/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
||||||||||| || ||||| |||||||| || |||| ||| || |||| ||
Sbjct 43811 ACCAGGTGAAGGGTTGATTCCTTCTGGATGTTATAGTCGGAGAGGGTTCGACCGTCCTCG 43870
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||| || ||||| ||||||||||| | ||| | ||| ||||| |||
Sbjct 43871 AGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGG 43930
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | || ||||||| || || ||||| | || || |||||
Sbjct 43931 ATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCGACCTCAAGGGTGATGGTCTTG 43990
Query 44309 CCCGTGAGGGTCTTCACGA 44327
|| || | |||||| ||||
Sbjct 43991 CCGGTCAAGGTCTTGACGA 44009
>seq85
Length=135120
Score = 129 bits (142), Expect = 4e-25
Identities = 161/220 (73%), Gaps = 7/220 (3%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| |||||| ||| |||||| ||||||||||| ||| || ||| | || ||
Sbjct 93973 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 94032
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC--G 44246
|||||||| || |||||||| | |||||||| || | || | ||| ||||| ||| |
Sbjct 94033 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 94092
Query 44247 TT-----ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAAT 44301
| ||||| ||| | | | |||||||||| || |||||||| | || ||
Sbjct 94093 ATNNTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 94152
Query 44302 CGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341
|||||| |||||||||||||| ||||| || |||||||||
Sbjct 94153 CGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATGATG 94192
>seq323
Length=1534178
Score = 113 bits (124), Expect = 3e-20
Identities = 136/183 (74%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||||||||| |||| ||| || | || || |||||||| ||||| ||||
Sbjct 1260295 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 1260236
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
|||| ||||||||||| | || | || ||||| ||| ||||| ||| || |||
Sbjct 1260235 TCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1260176
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| |||||||| | || || ||||| | || || ||||| ||||| |||||||||||
Sbjct 1260175 --CGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 1260118
Query 44326 GAA 44328
|||
Sbjct 1260117 GAA 1260115
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359988267731862
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |