Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31]
486 sequences; 36,567,111 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq323 140 8e-28
seq85 140 8e-28
seq58 136 1e-26
seq389 84.2 5e-11
>seq323
Length=1534178
Score = 140 bits (154), Expect = 8e-28
Identities = 139/180 (77%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || || || || || || |||||||||||||| || || ||||||||
Sbjct 1260114 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCAT 1260173
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| || ||||| ||||| |||||||| || || ||||| ||||| ||||| ||| |
Sbjct 1260174 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATT 1260233
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||||||||| || |||||||| ||||| | || || |||| || ||| |||| ||
Sbjct 1260234 GATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAA 1260293
>seq85
Length=135120
Score = 140 bits (154), Expect = 8e-28
Identities = 159/212 (75%), Gaps = 8/212 (4%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || ||||| || || ||||||||||| |||||||| || |||
Sbjct 94185 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 94126
Query 177984 ACCATCGAGAACGTCAAA--CAA-----AAGATTCAGGACAAAGAAGGAATCCCTCCGGA 178036
||||| || |||||||| ||| | || |||||||| || || ||||| |||||
Sbjct 94125 ACCATTGACAACGTCAAGTCCAAGATCCANNATCCAGGACAAGGAGGGTATCCCCCCGGA 94066
Query 178037 CCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096
|||||| ||||||||||| || || || |||||||| ||||| | || || ||| ||
Sbjct 94065 CCAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 94006
Query 178097 TAACGTCCAAAAAGAATCAACACTGCATCTTG 178128
||| |||| || || || || || || ||||
Sbjct 94005 CAACATCCAGAAGGAGTCCACCCTTCA-CTTG 93975
>seq58
Length=162708
Score = 136 bits (150), Expect = 1e-26
Identities = 154/206 (75%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || |||||||| || || |||||||||||||| || || |||
Sbjct 44296 CAAATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGTCATCCGAC 44237
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || || || ||||| |||||||| || |||||||| || |||||
Sbjct 44236 ACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGA--NNATCCCTCCTGATCAGCAG 44179
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | || |||||||| || |||||||| ||||| | || || ||||||| ||| |
Sbjct 44178 CGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGATTACAACATT 44119
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 44118 CAGAAGGAGTCGACTCTCCACCTCGT 44093
>seq389
Length=813516
Score = 84.2 bits (92), Expect = 5e-11
Identities = 182/263 (69%), Gaps = 12/263 (5%)
Strand=Plus/Minus
Query 214123 CCAAAGTTTTTCTGGTTGCTTTTGCG---GCAAATGGCATCTTTGTATGCGATGAAAGGC 214179
|||| ||| || ||||| || ||||| ||| || ||| ||||| ||||||||
Sbjct 461480 CCAAGGTTCTTTTGGTTACTCTTGCGATTGCAG-TG--ATCCTTGTAGAGCATGAAAGGG 461424
Query 214180 ATTCCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCAC-GAC 214238
|||| ||| || || |||||||| | ||| |||| || ||||| | |||
Sbjct 461423 TTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGAC 461364
Query 214239 CTTTTTGGCTCTT-CCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGT 214297
|| | | ||| ||||| | ||||||||||| || |||| ||||||||| |||||
Sbjct 461363 --TTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGAGCCTCAAATTCGTCACCGT 461306
Query 214298 AGACATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCC 214357
|| ||| |||| || || ||||| ||||| | ||| |||||| || || || |
Sbjct 461305 AGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATGAGAGTCCATTCGCCGTT-TCTC 461247
Query 214358 T-GACTCTTTTCATGAAAAGGTC 214379
| ||| | ||||||||||| ||
Sbjct 461246 TCGACACGCTTCATGAAAAGATC 461224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203723704516284
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |