Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31] 486 sequences; 36,567,111 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq85 125 7e-24 seq58 125 7e-24 seq323 123 2e-23 >seq85 Length=135120 Score = 125 bits (138), Expect = 7e-24 Identities = 171/236 (72%), Gaps = 9/236 (4%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||| || || ||| ||||||||| ||||| |||||| Sbjct 93955 CCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 94014 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||||||||| || || || || || ||||| ||||||| ||| Sbjct 94015 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 94074 Query 41756 ACGCTCTCCTTGTCCATGATTTT-----TTG--CTTCAACGACGAC-ACAGTGTCGCTCG 41807 | | |||||||||| ||| | ||| ||| ||| | | | |||||| | Sbjct 94075 ATACCCTCCTTGTCCTGGATNNTGGATCTTGGACTT-GACGTTGTCAATGGTGTCGGAAG 94133 Query 41808 ACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||||||| | || ||||| || ||||| || ||||| ||||||||||||||| Sbjct 94134 ACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATG 94189 >seq58 Length=162708 Score = 125 bits (138), Expect = 7e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || |||||||| ||||||||||||||| Sbjct 43793 CCACCACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTATAGTCGGAG 43852 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| |||||||||||||||||||| |||| ||||| || || | || Sbjct 43853 AGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGG 43912 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||| ||| | | | ||||||| ||||| || Sbjct 43913 ATACCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATAGTGTCGGATGACTCGAC 43971 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 ||| | || || || || || |||| ||||| |||| Sbjct 43972 CTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGA 44009 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||||||||| || |||||||||||||| | || |||||||||||||||||||| Sbjct 44110 CTCCTTCTGAATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 44169 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 |||| ||||| || || | || | ||||||||| ||| || |||| || Sbjct 44170 AATCAATCGCTGCTGATCAGGAGGGA--TNNTCCTTGTCCTGGATCTTGGACTTC-ACAT 44226 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | |||||| ||||| ||||| | || || || || || || || ||||| | Sbjct 44227 TGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGA 44286 Query 41850 CGAAAATCTGCAT 41862 |||| || ||||| Sbjct 44287 CGAAGATTTGCAT 44299 >seq323 Length=1534178 Score = 123 bits (136), Expect = 2e-23 Identities = 139/184 (76%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||||||||||| || | || |||||||||||||||||||| | Sbjct 1260295 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 1260236 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 ||| ||||| || |||| ||| | || |||||||||| ||| || ||| || | Sbjct 1260235 TCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1260176 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | ||||| ||||| ||||| | || || || || |||||||| ||||| || Sbjct 1260175 CG--ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 1260118 Query 41851 GAAA 41854 |||| Sbjct 1260117 GAAA 1260114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301191503200