Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31]
486 sequences; 36,567,111 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq85 125 7e-24
seq58 125 7e-24
seq323 123 2e-23
>seq85
Length=135120
Score = 125 bits (138), Expect = 7e-24
Identities = 171/236 (72%), Gaps = 9/236 (4%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | |||| || || ||| ||||||||| ||||| ||||||
Sbjct 93955 CCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 94014
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || ||||||||||| || || || || || ||||| ||||||| |||
Sbjct 94015 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 94074
Query 41756 ACGCTCTCCTTGTCCATGATTTT-----TTG--CTTCAACGACGAC-ACAGTGTCGCTCG 41807
| | |||||||||| ||| | ||| ||| ||| | | | |||||| |
Sbjct 94075 ATACCCTCCTTGTCCTGGATNNTGGATCTTGGACTT-GACGTTGTCAATGGTGTCGGAAG 94133
Query 41808 ACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||||||||| | || ||||| || ||||| || ||||| |||||||||||||||
Sbjct 94134 ACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATG 94189
>seq58
Length=162708
Score = 125 bits (138), Expect = 7e-24
Identities = 160/218 (73%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| || || || |||||||| |||||||||||||||
Sbjct 43793 CCACCACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTATAGTCGGAG 43852
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| |||||||||||||||||||| |||| ||||| || || | ||
Sbjct 43853 AGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGG 43912
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| || ||| ||| | | | ||||||| ||||| ||
Sbjct 43913 ATACCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATAGTGTCGGATGACTCGAC 43971
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852
||| | || || || || || |||| ||||| ||||
Sbjct 43972 CTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGA 44009
Score = 111 bits (122), Expect = 1e-19
Identities = 142/193 (74%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||||||||| || |||||||||||||| | || ||||||||||||||||||||
Sbjct 44110 CTCCTTCTGAATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 44169
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790
|||| ||||| || || | || | ||||||||| ||| || |||| ||
Sbjct 44170 AATCAATCGCTGCTGATCAGGAGGGA--TNNTCCTTGTCCTGGATCTTGGACTTC-ACAT 44226
Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849
| | | |||||| ||||| ||||| | || || || || || || || ||||| |
Sbjct 44227 TGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGA 44286
Query 41850 CGAAAATCTGCAT 41862
|||| || |||||
Sbjct 44287 CGAAGATTTGCAT 44299
>seq323
Length=1534178
Score = 123 bits (136), Expect = 2e-23
Identities = 139/184 (76%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| |||||||||||||| || | || |||||||||||||||||||| |
Sbjct 1260295 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 1260236
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790
||| ||||| || |||| ||| | || |||||||||| ||| || ||| || |
Sbjct 1260235 TCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1260176
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | ||||| ||||| ||||| | || || || || |||||||| ||||| ||
Sbjct 1260175 CG--ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 1260118
Query 41851 GAAA 41854
||||
Sbjct 1260117 GAAA 1260114
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462301191503200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |