Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717905.1_202016-08-31]
303 sequences; 36,666,367 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq291 129 1e-24
seq47 84.2 5e-11
>seq291
Length=442874
Score = 129 bits (142), Expect = 1e-24
Identities = 271/399 (68%), Gaps = 4/399 (1%)
Strand=Plus/Minus
Query 230237 CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCA 230296
||||||| ||||| ||| || | |||||||| || | | ||||||||| |||
Sbjct 985 CCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCTAACGAGCTCA 926
Query 230297 TCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAG 230355
| ||| ||||||||||| || || | | || | | || | | || | ||| ||
Sbjct 925 TTTCTCGTGACGAGGGTCTTCA-CACCGACTTTGCCTGTCTCCTCCACTCTCACCTCAAG 867
Query 230356 A-ACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAA 230414
|| || | || | ||| | || | | || || || || || ||| | || |
Sbjct 866 GGACGTGCCAGCAAAC-AGATGATCCAGGACATTATCACCGATGCCGTTTCTATTGAGCA 808
Query 230415 GGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGG 230474
|||||| || ||| ||| | || ||| ||| | ||||||||| | | || |||
Sbjct 807 GGAGTTTCTTACTGAGGCTCTCCCTTGTGCCCTGCTCGGCATGAACTCCAACCTCATGAA 748
Query 230475 ACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTA 230534
||||||||||||||||| || || || | | ||||| || || ||||||| |||||
Sbjct 747 GCAGTACATCGAATTCGTCGCTGATCGTCTCCTCGTTGCTCTCGGCAACGAGAAGGTGTA 688
Query 230535 CAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTT 230594
||| || | ||||| || | || |||||| ||| || ||| || |||||||||||
Sbjct 687 CAAGTCCACCAACCCTTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTT 628
Query 230595 CTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGT 230633
|||||| ||||| || |||||| |||| | | |||||
Sbjct 627 CTTCGAGAAGCGCGTTGCTGACTACCAGAAGGCCGGTGT 589
>seq47
Length=351353
Score = 84.2 bits (92), Expect = 5e-11
Identities = 123/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 319857 GGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCC 319916
|||||| || || | ||| |||| || |||||||| ||||| || || || | ||
Sbjct 236178 GGGGAAACCCTCGACCTGCTCGTTGTTGATGGCGCGCATGAGGGTGGACTTTCCGGAACC 236119
Query 319917 GTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAG 319976
||| || ||||| |||||||| || | || || || || || | || | ||| ||
Sbjct 236118 GTTGGGACCACAAAGACCGTAACGCTGACCACGCTTGAGACGGAGGTGAGTCTGGTTGAG 236059
Query 319977 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030
|||||| || |||| || || ||||| ||| ||| | || |||||||||||
Sbjct 236058 AAGAATCTTGGCACCGTAGGCAAGAGAGAATGTACAGTTGCAAAGATCCTCACC 236005
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057819893328890
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |