Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717905.1_202016-08-31] 303 sequences; 36,666,367 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq291 129 1e-24 seq47 84.2 5e-11 >seq291 Length=442874 Score = 129 bits (142), Expect = 1e-24 Identities = 271/399 (68%), Gaps = 4/399 (1%) Strand=Plus/Minus Query 230237 CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCA 230296 ||||||| ||||| ||| || | |||||||| || | | ||||||||| ||| Sbjct 985 CCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCTAACGAGCTCA 926 Query 230297 TCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAG 230355 | ||| ||||||||||| || || | | || | | || | | || | ||| || Sbjct 925 TTTCTCGTGACGAGGGTCTTCA-CACCGACTTTGCCTGTCTCCTCCACTCTCACCTCAAG 867 Query 230356 A-ACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAA 230414 || || | || | ||| | || | | || || || || || ||| | || | Sbjct 866 GGACGTGCCAGCAAAC-AGATGATCCAGGACATTATCACCGATGCCGTTTCTATTGAGCA 808 Query 230415 GGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGG 230474 |||||| || ||| ||| | || ||| ||| | ||||||||| | | || ||| Sbjct 807 GGAGTTTCTTACTGAGGCTCTCCCTTGTGCCCTGCTCGGCATGAACTCCAACCTCATGAA 748 Query 230475 ACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTA 230534 ||||||||||||||||| || || || | | ||||| || || ||||||| ||||| Sbjct 747 GCAGTACATCGAATTCGTCGCTGATCGTCTCCTCGTTGCTCTCGGCAACGAGAAGGTGTA 688 Query 230535 CAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTT 230594 ||| || | ||||| || | || |||||| ||| || ||| || ||||||||||| Sbjct 687 CAAGTCCACCAACCCTTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTT 628 Query 230595 CTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGT 230633 |||||| ||||| || |||||| |||| | | ||||| Sbjct 627 CTTCGAGAAGCGCGTTGCTGACTACCAGAAGGCCGGTGT 589 >seq47 Length=351353 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 319857 GGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCC 319916 |||||| || || | ||| |||| || |||||||| ||||| || || || | || Sbjct 236178 GGGGAAACCCTCGACCTGCTCGTTGTTGATGGCGCGCATGAGGGTGGACTTTCCGGAACC 236119 Query 319917 GTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAG 319976 ||| || ||||| |||||||| || | || || || || || | || | ||| || Sbjct 236118 GTTGGGACCACAAAGACCGTAACGCTGACCACGCTTGAGACGGAGGTGAGTCTGGTTGAG 236059 Query 319977 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030 |||||| || |||| || || ||||| ||| ||| | || ||||||||||| Sbjct 236058 AAGAATCTTGGCACCGTAGGCAAGAGAGAATGTACAGTTGCAAAGATCCTCACC 236005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057819893328890