Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717905.1_202016-08-31] 303 sequences; 36,666,367 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq38 172 7e-38 seq291 136 5e-27 >seq38 Length=1092239 Score = 172 bits (190), Expect = 7e-38 Identities = 628/971 (65%), Gaps = 14/971 (1%) Strand=Plus/Minus Query 53711 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 53769 || || || || ||||| || ||||||| || | ||| |||| || ||||||||||| Sbjct 463333 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGC-GCAGTATTCAATGATCTCAGTGCA 463275 Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829 || || | |||||| || | || | ||| |||||||| || || ||| Sbjct 463274 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAGTGATC 463215 Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889 ||| || || ||||| || | || || || |||||| || | ||| || | ||| | Sbjct 463214 CTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAG 463155 Query 53890 GACACGAGCCTTTATTATAGATTTGTATCTCTTT---TCTCTTTCGTATAGTGTATACAA 53946 ||||||| || ||| ||| | ||| ||||| ||||| | |||| Sbjct 463154 TTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAG 463098 Query 53947 TCGTTCAAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCATCCGGACACATCA 54005 ||||| ||||| || | || | ||| ||||| ||||| | || ||||| | Sbjct 463097 AGCCTCAAATTCGTCACCGTAG-CAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATGA 463039 Query 54006 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 54065 | ||| || |||| || || || ||||| || |||||||| ||||||||||||| Sbjct 463038 GAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCTA 462979 Query 54066 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 54125 || || || | | | ||||| || || ||||||| ||||| |||||| Sbjct 462978 AGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCAAGGAACT 462919 Query 54126 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTC 54185 | | | || | ||||| ||||| | ||| |||| | | ||||| || ||||| | Sbjct 462918 CGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTAC 462859 Query 54186 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 54245 | ||||| || | ||| | ||| ||||| || | || | || ||| |||| ||||| | Sbjct 462858 CACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACCGT 462799 Query 54246 TGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT- 54304 |||| | ||||||||| |||| ||| || ||| ||||||| || | | | | Sbjct 462798 TGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT-TCGGTGGGCGTTC 462740 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | || || || || ||||| || || || | || || || | ||||| ||||| Sbjct 462739 AAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATA 462680 Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 54424 || || || || || ||| |||| | || || || || || | || | | | Sbjct 462679 CCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTGGA 462620 Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || || || ||||| || || || || || || | || || | || ||| Sbjct 462619 GTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGTTG 462560 Query 54485 TACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 54543 || ||||| | | || ||||| || | ||||| || ||||| ||||| | Sbjct 462559 TATGTCTCCAAGACACGCTCAATATCGTCACCCCAG-ATTCCAACAGCGACTCGCATGAT 462501 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 ||| ||||| || | ||| | || ||| || || | |||||||| ||| | ||| Sbjct 462500 CATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATCTGTAGCAAGTATGATCTGGACAA 462441 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 ||| || |||||||||||||| ||||| || || || | ||| |||||| ||| Sbjct 462440 GGTTCGGAAGCCAAAATAGTTGTAGTTGAAGTCGCGATCATAGACAATCGCTGAGTCGAG 462381 Query 54664 TTTATCCTTAT 54674 || || |||| Sbjct 462380 TTCCTCTTTAT 462370 >seq291 Length=442874 Score = 136 bits (150), Expect = 5e-27 Identities = 368/559 (66%), Gaps = 8/559 (1%) Strand=Plus/Plus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| || || ||| ||| ||||||||||| | | ||| | ||||| ||||| | || Sbjct 888 ACAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAAATGAGCTCGTTAGAAAAGCTCAG 947 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253 || ||||| ||||||||||| || ||||| || ||||| ||||| | || ||||| Sbjct 948 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 1007 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATG 24310 || || || || || ||||| |||| ||| | | | | | | | || || Sbjct 1008 GATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCCTG 1067 Query 24311 TATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 24369 ||||| | || |||||||| ||||||||| | ||||| || || || | || | Sbjct 1068 GATCCATCGGATG-GCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGT 1126 Query 24370 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 24429 | ||||| || | | | || || | || ||||| || | || || Sbjct 1127 TGAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATG 1186 Query 24430 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 24489 |||| || || ||||| || || || || || || ||||| |||| |||||||| | Sbjct 1187 TTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGA 1246 Query 24490 TCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 24549 |||| || || | ||||| || | | ||| ||||| || || ||||| ||| | Sbjct 1247 TCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGCAG 1306 Query 24550 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT---TAGTTTATTCC 24606 | || || || | | || || || |||| ||||||| || | | || |||| Sbjct 1307 CGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTTCC 1366 Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 | || | || ||| || || | ||| | || || ||||||| || || |||||||||| Sbjct 1367 AGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCT 1426 Query 24667 TTTTATACATATTCCAGAT 24685 | || ||||| | |||||| Sbjct 1427 TCTTGTACATTTGCCAGAT 1445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719351279440