Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717905.1_202016-08-31] 303 sequences; 36,666,367 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq291 237 2e-57 seq189 140 3e-28 seq187 138 1e-27 seq241 129 6e-25 >seq291 Length=442874 Score = 237 bits (262), Expect = 2e-57 Identities = 398/564 (71%), Gaps = 15/564 (3%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||| | |||||| | || || Sbjct 1445 ATCTGGCAAATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGCTGAGGAGATCGATCTC 1386 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACA-ACGAGCGCCATTTCATCA 116750 |||||||| | | | ||||||| | || |||| | || |||||| | |||||| Sbjct 1385 TCCAAGGATCTCCA-CGACTGGAACAACCGATTGA-CTTCAGACGAGCAATACTTCATCT 1328 Query 116751 AGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGC 116810 ||| | || || || ||||| ||| ||||||||||||||| |||||||| || |||| Sbjct 1327 CCCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATCGTCAATGAGAATCTTGTTGAGC 1268 Query 116811 GTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 | ||| ||||| ||| | ||||||| || |||||||| || || |||||| | Sbjct 1267 GATTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGA 1208 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTT 116927 |||||||| | ||||| |||| || || ||||||||| || ||| | | | || Sbjct 1207 TGGAGAACATCCACTCCGAAACATACTCCCTCCTCATCGATACCTACATCAAGGACCCTG 1148 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | | | | | | | | || |||||| | || || || || ||| || | |||||| Sbjct 1147 CCCA-GCGTACATAC--CTCTTCAACGCCGTTGACACTATTCCTTGCATCCGAAAGAAGG 1091 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAG-AGGCCGCCTTCGGCGAGCGCCTGGTG 117046 | || ||||| | || |||||| | || || | | |||||| |||| || || Sbjct 1090 CGGATTGGGCCATCCGATGGATC-CAGGATAAGAACTCTACCTTCGCTCAGCGTCTTGTT 1032 Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 || || || ||||| ||||| ||||||| || || || |||| || |||||| Sbjct 1031 GCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCTGGCTC 972 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 ||||| || ||||||||||| || |||| || ||||||||||| || | |||||| Sbjct 971 AAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCTAACGAGCTCATTTCTCGTGACGAG 912 Query 117167 GGTCTGCATTGCGACTTTGCCTGT 117190 ||||| || ||||||||||||| Sbjct 911 GGTCTTCACACCGACTTTGCCTGT 888 >seq189 Length=836686 Score = 140 bits (154), Expect = 3e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || || |||||| | || || || | || Sbjct 312564 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 312505 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | ||||| ||||| |||||| ||||||| Sbjct 312504 GACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 312446 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| || || || ||||| || || | |||||||| | ||||||||| Sbjct 312445 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 312386 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| |||| || || Sbjct 312385 CATCCAGAAGGAGTCCACCCTTCA 312362 >seq187 Length=1074518 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| ||||||||| |||| ||||| | || Sbjct 440348 ATGCAAATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGTCATCC 440289 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| || || | ||||| ||||||||||| | || ||| Sbjct 440288 GACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCAG 440229 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | || | ||| ||||| ||||| || || | ||||||||| |||||||||| Sbjct 440228 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 440169 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 440168 ATCCAGAAGGAGTCGACTCTCCACCTCGT 440140 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| || || ||| |||| || || | | Sbjct 440576 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACTATTACCCTCGAGGTTGAGTCATCT 440517 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| ||||| || |||| ||||| ||||||||||| | || || Sbjct 440516 GATACTATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCA 440458 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | || | ||| ||||| ||||| || || | ||||||||| ||| ||||| Sbjct 440457 GCAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGATTACAA 440398 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || || || || || | ||| | | ||||| Sbjct 440397 CATCCAGAAGGAGTCGACTCTCCACCTCGTCCTCCGCCTTCGTGGCGG 440350 Score = 105 bits (116), Expect = 7e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || | || ||||| ||||||||| | || ||||| | |||||| | Sbjct 440056 TCGTCAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCATCCGACACTATCG 439997 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| ||||| || || | ||||| ||||| ||||| | || ||||| ||| | Sbjct 439996 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCGATTG 439938 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 || | ||| ||||| ||||| || |||| || |||||| ||||||||||||||||||| Sbjct 439937 ATTTTCGCCGGCAAGCAGCTCGAGGACGGTCGAACCCTCTCCGACTACAACATCCAGAAG 439878 Query 40879 GAGGCCACGCTGCATCTAGT 40898 || | || || || || || Sbjct 439877 GAATCAACCCTTCACCTGGT 439858 >seq241 Length=404015 Score = 129 bits (142), Expect = 6e-25 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| |||| ||||| | | |||| | | Sbjct 300560 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCATC 300619 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||||||| |||| ||||| ||| | Sbjct 300620 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATTG 300679 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | || |||||| ||||||||||||||||||| Sbjct 300680 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 300739 Query 40879 G 40879 | Sbjct 300740 G 300740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217248607280