Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717905.1_202016-08-31] 303 sequences; 36,666,367 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq38 257 1e-63 seq291 143 2e-29 seq189 91.5 1e-13 >seq38 Length=1092239 Score = 257 bits (284), Expect = 1e-63 Identities = 621/936 (66%), Gaps = 8/936 (1%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 |||||||| ||||| || || ||||| || || ||| || | || || || || Sbjct 463333 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGCAC 463274 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| | || || || | || | ||||| || || |||||||| |||| Sbjct 463273 AGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAGTGATCC 463214 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 |||||||||||| | || | || ||||| ||| | ||| | || || ||| | Sbjct 463213 TTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAGT 463154 Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGC 23265 ||||||| | | | | | || ||| || ||| ||||||||||| ||||| || Sbjct 463153 TTCTGAGCCTTGATA-GACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGAGC 463095 Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325 ||||||||| ||||||| ||||| || ||||| || ||| | || ||||||||| | Sbjct 463094 CTCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATGAGAGT 463035 Query 23326 CCACATTGAGTCATTT---TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382 ||| | | | ||| || || || |||| |||||||| || ||||| ||||| | Sbjct 463034 CCA---TTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCTAA 462978 Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442 |||||| || || ||||| |||||||| || ||| |||||| | ||| | || || Sbjct 462977 GAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCAAGGAACTC 462918 Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502 || ||||| || ||||| || || ||||| | ||| || || || |||| ||| || || Sbjct 462917 GAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTACC 462858 Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562 ||||| || |||||||| || ||||||||| |||| | ||||| || |||| |||||| Sbjct 462857 ACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACCGTT 462798 Query 23563 GGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAA 23622 ||| | || || || | || || | || || | ||| ||| || Sbjct 462797 GGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCGTTCAA 462738 Query 23623 ACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCC 23682 || || || || || || || ||||| || || || || || |||||||| || Sbjct 462737 GCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATACC 462678 Query 23683 CTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGT 23742 || ||||||||||| || | | || | ||| || || || | || | | || || Sbjct 462677 ATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTGGAGT 462618 Query 23743 AGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTA 23802 | |||| ||| | || ||||| || || || ||| | | ||||| || ||||| Sbjct 462617 ACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGTTGTA 462558 Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862 || || | | | ||||| || || || || || | ||||| ||||| ||||| Sbjct 462557 TGTCTCCAAGACACGCTCAATATCGTCACCCCAGATTCCAACAGCGACTCGCATGATCAT 462498 Query 23863 GTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGT 23922 | || || | ||| | | ||||| ||| | | || ||||| | || || Sbjct 462497 ATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATCTGTAGCAAGTATGATCTGGACAAGGT 462438 Query 23923 TTTAAATCCAAAATAGTCATAGTTAAAGTCACGATC 23958 | || |||||||||| ||||| ||||| ||||| Sbjct 462437 TCGGAAGCCAAAATAGTTGTAGTTGAAGTCGCGATC 462402 Score = 105 bits (116), Expect = 6e-18 Identities = 224/331 (68%), Gaps = 4/331 (1%) Strand=Plus/Minus Query 22241 TTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAA--TG 22298 |||| |||||| |||||| || || || || || || || ||||| | | ||| || Sbjct 464119 TTGAGAGACTGAGACTGATCAATGAAGGCACCACGGTCAGCAGCCATCTGCA-CAACCTG 464061 Query 22299 TACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATT 22358 | ||| || || ||||| || ||||||||||| | ||||||| || || Sbjct 464060 T-CGCTGAGAAATCTCCCACACAGTCTTGTACAGAGCCTTGATCTCGGCAGGGATGTTGG 464002 Query 22359 CGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACA 22418 ||| |||||| || ||||||| ||||| || || || | |||| ||| | Sbjct 464001 GGATGTTCTGGATAGAACCGTTATCAGCAATGATGCGGTTCTTCATAGCATCGGACCAAA 463942 Query 22419 AACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACA 22478 ||| ||| || | ||| |||| || |||| || || || |||||||| | | Sbjct 463941 GACCCATGTCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAA 463882 Query 22479 AGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTA 22538 ||| ||||||||||| |||||||| ||| | || || || |||| ||||| || || | Sbjct 463881 GGACTCGGCGTTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCATTCGTTGTTGCCAAGAA 463822 Query 22539 TCTGAGCGGTCGAAGCGGTCGGCATCGGCGC 22569 |||| | ||| ||||| ||||| || || Sbjct 463821 TCTGCGAGGTACTGGCGGTAGGCATAGGAGC 463791 >seq291 Length=442874 Score = 143 bits (158), Expect = 2e-29 Identities = 455/701 (65%), Gaps = 37/701 (5%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| |||||||| || || || ||||| | || || | || || Sbjct 1445 ATCTGGCAAATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGCTGAGGAGATCGATCTC 1386 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAAT-CTGA-GAGAAAT--TTTATTAA 57685 || |||||||| ||| ||| | || | || | | || ||| ||| || || Sbjct 1385 TCCAAGGATCTCCACGACTGGAACAACCG-ATTGACTTCAGACGAGCAATACTTCATCTC 1327 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745 ||| | | || || ||||| || ||||| || || || || |||||| | || || | Sbjct 1326 CCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATCGTCAATGAGAATCTTGTTGAGCG 1267 Query 57746 ATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805 ||| || || || | | ||||| ||||||| || || || || | || Sbjct 1266 ATTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGAT 1207 Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGA 57865 || ||| | || || |||| || || || ||||||||||| ||| | |||||| | Sbjct 1206 GGAGAACATCCACTCCGAAACATACTCCCTCCTCATCGATACCTACATCAAGGACCCTGC 1147 Query 57866 CGAGAAACGTAGA---CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGC 57922 | || |||| | || |||||||| | || || || || ||| |||||||| Sbjct 1146 CCAG---CGTACATACCTCTTCAACGCCGTTGACACTATTCCTTGCATCCGAAAGAAGGC 1090 Query 57923 AGAGTGGTCAATCAAATGGATAAA----AAGCGCCACGGCCACGTTCGCCGAGAGGCTAA 57978 || ||| | ||| |||||| | ||| | | || ||||| || | || Sbjct 1089 GGATTGGGCCATCCGATGGATCCAGGATAAGAACT----CTACCTTCGCTCAGCGTCTTG 1034 Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 | || || || ||||| || ||||| ||||| || |||||| | || || ||| Sbjct 1033 TTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCTGGC 974 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 | ||||| || ||||| ||||| || |||| ||| |||||| | || || || |||| Sbjct 973 TCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCTAACGAGCTCATTTCTCGTGACG 914 Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT---------TGTCAATA 58149 ||||||| || || || ||||| || || | |||||||| | || || | Sbjct 913 AGGGTCTTCACACCGACTTTGCCTGTCTCCTCCACTCTCACCTCAAGGGACGTGCCAGCA 854 Query 58150 AACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGT 58209 ||| || | ||| ||||||||||||||| || || | || || | |||| Sbjct 853 AACAGATG---------ATCCAGGACATTATCACCGATGCCGTTTCTATTGAGCAGGAGT 803 Query 58210 TTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAAC 58250 || | || || || || || ||| ||||||| |||||| Sbjct 802 TTCTTACTGAGGCTCTCCCTTGTGCCCTGCTCGGCATGAAC 762 >seq189 Length=836686 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| || || || || ||||||||| | || || || | || Sbjct 312565 CATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTC 312506 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| | || ||||||||| || | || || ||||| Sbjct 312505 CGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 312446 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || ||||| || ||| | || || || ||||||| || || Sbjct 312445 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 312386 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || ||||| |||| || Sbjct 312385 CATCCAGAAGGAGTCCACCCTTCACTTGGTCCT 312353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764711659760