Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717905.1_202016-08-31]
303 sequences; 36,666,367 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq291 168 8e-37
seq38 150 2e-31
>seq291
Length=442874
Score = 168 bits (186), Expect = 8e-37
Identities = 375/559 (67%), Gaps = 8/559 (1%)
Strand=Plus/Plus
Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640
||| || || ||| ||| ||||||||||| | | ||| | ||||||||||| | ||
Sbjct 888 ACAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAAATGAGCTCGTTAGAAAAGCTCAG 947
Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700
|| ||||| ||||||||||| || ||||| || |||||||| || | ||| |||||
Sbjct 948 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 1007
Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATG 33757
||| || || || |||||||| |||| ||| | || | | | | | || ||
Sbjct 1008 GATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCCTG 1067
Query 33758 TATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33816
||||| | || |||||||| ||||||||| | ||||| || || || | ||| |
Sbjct 1068 GATCCATCGGATG-GCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGT 1126
Query 33817 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33876
| ||||| || | | | || || | || |||||||| | || ||
Sbjct 1127 TGAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATG 1186
Query 33877 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33936
|||| || || ||||| || || ||||| || || ||||| |||| |||||||| |
Sbjct 1187 TTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGA 1246
Query 33937 TCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996
|||| || || | ||||| || | | ||| ||||| || || || || ||| |
Sbjct 1247 TCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGCAG 1306
Query 33997 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT---TAGTTTATTCC 34053
| || || || | | || || || |||| ||||||| || | | || ||||
Sbjct 1307 CGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTTCC 1366
Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113
| || | || ||| || || | ||| | || || ||||||| || || ||||||||||
Sbjct 1367 AGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCT 1426
Query 34114 TTTTATACATATTCCAGAT 34132
| || ||||| | ||||||
Sbjct 1427 TCTTGTACATTTGCCAGAT 1445
>seq38
Length=1092239
Score = 150 bits (166), Expect = 2e-31
Identities = 453/694 (65%), Gaps = 4/694 (1%)
Strand=Plus/Minus
Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280
||| ||||| | || ||||| | | ||| || |||| || || || ||||| ||
Sbjct 463061 AGGGCATTCGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAA 463002
Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340
|||||||| ||||||||||||| || || || | | | ||||| || ||
Sbjct 463001 AAGATCAGGGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTG 462942
Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400
||||||| ||||| |||||| | | | || | ||||| ||||| | ||| |||||
Sbjct 462941 ATTCTTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGC 462882
Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460
| | ||||| || ||||| || ||||| || | ||| | ||| ||||| || | ||
Sbjct 462881 GAAGGCACCAGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACAC 462822
Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520
| || ||| |||| |||||||| || ||||||||||||||| ||| || ||| |
Sbjct 462821 ACGCAGCATGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGT 462762
Query 63521 GGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579
|||||| || | | | | | || || || || ||||| || || || | || |
Sbjct 462761 GGCACGGAT-TCGGTGGGCGTTCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCAC 462703
Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639
| || | || || ||||| || || ||||| || || |||| | || || || |
Sbjct 462702 AAGTCTTGAGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGC 462643
Query 63640 AGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63699
| || | || | | | ||| || || || ||||| || || || || || |
Sbjct 462642 ATGATGAAAGCTGAGGCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGA 462583
Query 63700 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGA 63758
| | || || | || ||||| ||||| | | || ||||| || |
Sbjct 462582 AGAACTTGCTTGACATGAGGTTGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAG- 462524
Query 63759 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATT 63818
||||| || ||||| ||||| | ||| ||||| || | ||| |||||||| || ||
Sbjct 462523 ATTCCAACAGCGACTCGCATGATCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATC 462464
Query 63819 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63878
| | |||||| ||| | ||| ||| || |||||||||||||| ||||| ||
Sbjct 462463 TGTAGCAAGTATGATCTGGACAAGGTTCGGAAGCCAAAATAGTTGTAGTTGAAGTCGCGA 462404
Query 63879 TCGTAAATAATAACCGAATTGAGCTTATCCTTAT 63912
|| || | ||| | || | ||| | || ||||
Sbjct 462403 TCATAGACAATCGCTGAGTCGAGTTCCTCTTTAT 462370
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629815214565840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |