Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717905.1_202016-08-31]
303 sequences; 36,666,367 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq291 168 8e-37
seq38 161 1e-34
>seq291
Length=442874
Score = 168 bits (186), Expect = 8e-37
Identities = 375/559 (67%), Gaps = 8/559 (1%)
Strand=Plus/Plus
Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362
||| || || ||| ||| ||||||||||| | | ||| || ||||| ||||| | ||
Sbjct 888 ACAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAAATGAGCTCGTTAGAAAAGCTCAG 947
Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422
|| ||||| ||||||||||| || ||||| || |||||||| || | || |||||
Sbjct 948 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 1007
Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATG 33479
||| || || || |||||||| |||| ||| | || | | | | | || ||
Sbjct 1008 GATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCCTG 1067
Query 33480 TATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33538
||||| | || |||||||| ||||||||| | ||||| || || || | ||| |
Sbjct 1068 GATCCATCGGATG-GCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGT 1126
Query 33539 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33598
| ||||| || | | | || || | || |||||||| | || ||
Sbjct 1127 TGAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATG 1186
Query 33599 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33658
|||| || || ||||| || || ||||| || || ||||| |||| |||||||| |
Sbjct 1187 TTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGA 1246
Query 33659 TCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTG 33718
|||| || || | ||||| || | | ||| ||||| || || ||||| ||| |
Sbjct 1247 TCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGCAG 1306
Query 33719 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT---TAGTTTATTCC 33775
| || || || | | || || || |||| ||||||| || | | || ||||
Sbjct 1307 CGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTTCC 1366
Query 33776 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835
| || | || ||| || || | ||| | || || ||||||| || || ||||||||||
Sbjct 1367 AGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCT 1426
Query 33836 TTTTATACATGTTCCAGAT 33854
| || ||||| | ||||||
Sbjct 1427 TCTTGTACATTTGCCAGAT 1445
>seq38
Length=1092239
Score = 161 bits (178), Expect = 1e-34
Identities = 629/973 (65%), Gaps = 18/973 (2%)
Strand=Plus/Minus
Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 62956
|| || || || ||||| || ||||||| || | ||| |||| || |||||||||||
Sbjct 463333 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGC-GCAGTATTCAATGATCTCAGTGCA 463275
Query 62957 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63016
|| || | ||| || || | || | ||| |||||||| || || |||
Sbjct 463274 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAGTGATC 463215
Query 63017 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63076
||| || || ||||| || | || || || |||| | || | ||| || | ||| |
Sbjct 463214 CTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAA- 463156
Query 63077 GACTC-GAGCCTTTATTATAGATTTGTATCTCCTT----TCTCTTTCGTATAGTGTATAC 63131
| || ||||||| || ||| ||| | |||| ||||| ||||| | |||
Sbjct 463155 GTTTCTGAGCCTTGAT---AGACTTGCGAC-CCTTACCCTCTCTCTCGTACTTTTCGTAC 463100
Query 63132 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCATCCGGACACAT 63190
| || || ||||| || | || | ||| ||||| ||||| | || |||||
Sbjct 463099 AGAGCCTCAAATTCGTCACCGTAG-CAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACAT 463041
Query 63191 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 63250
| | ||| || |||| || || || ||||| || |||||||| |||||||||||
Sbjct 463040 GAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGC 462981
Query 63251 TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63310
|| || || || | | | ||||| || || ||||||| ||||| |||||
Sbjct 462980 TAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCAAGGAA 462921
Query 63311 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63370
| | | | || | ||||| ||||| | ||| ||||| | | ||||| || |||||
Sbjct 462920 CTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTT 462861
Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430
|| ||||| || | ||| | ||| ||||| || | || | || ||| |||| |||||
Sbjct 462860 ACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACC 462801
Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490
||| || ||||||||||||||| ||| || ||| ||||||| || | | |
Sbjct 462800 GTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT-TCGGTGGGCGT 462742
Query 63491 T-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63549
| | || || || || ||||| || || || | || || || | || || ||||
Sbjct 462741 TCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGA 462682
Query 63550 TACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 63609
|||| || ||||| || || |||| | || || || || || | || | |
Sbjct 462681 TACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTG 462622
Query 63610 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63669
||| || || || ||||| || || || || || || | || || | || |
Sbjct 462621 GAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGT 462562
Query 63670 TGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATT 63728
|||| ||||| | | || ||||| || | ||||| || ||||| |||||
Sbjct 462561 TGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAG-ATTCCAACAGCGACTCGCATG 462503
Query 63729 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63788
| ||| ||||| || | ||| | || ||| || || | | |||||| ||| | |
Sbjct 462502 ATCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATCTGTAGCAAGTATGATCTGGAC 462443
Query 63789 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 63848
|| ||| || |||||||||||||| ||||| || || || | ||| | |||| |
Sbjct 462442 AAGGTTCGGAAGCCAAAATAGTTGTAGTTGAAGTCGCGATCATAGACAATCGCTGAGTCG 462383
Query 63849 AGTTTATCCTTAT 63861
|||| || ||||
Sbjct 462382 AGTTCCTCTTTAT 462370
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622944840587480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |