Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717905.1_202016-08-31] 303 sequences; 36,666,367 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq38 383 4e-101 seq291 98.7 3e-15 >seq38 Length=1092239 Score = 383 bits (424), Expect = 4e-101 Identities = 1146/1739 (66%), Gaps = 42/1739 (2%) Strand=Plus/Plus Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 |||| ||| ||||||||||||||| | ||||| || ||| |||| ||| | ||| Sbjct 462477 ATTGCTGAGCGCCCGCAGCATATGATCATGCGAGTCGCTGTTGGAATCTGGGGTGACGAT 462536 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCT--TCTAAGTGCTCGTGTATTCACGCACGCCA 363559 |||| | | || ||||| || || | | | || || | ||||| || || | Sbjct 462537 ATTGAGCGTGTCTTGGAGACATACAACCTCATGTCAA-GCAAGT-TCTTCACTCATGCAA 462594 Query 363560 CGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAA 363619 || || | | ||| || || |||| | || ||| | || || ||||| ||| | Sbjct 462595 GCCCCACTTTATTCAACGCCGGTACTCCACAGCCTCAGCTTTCATCATGCTTCCTTGTTG 462654 Query 363620 AAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTT 363679 | |||||||| || ||| || ||||||| || || || |||| |||||| | |||| Sbjct 462655 ATATGAAGGAGGACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTT 462714 Query 363680 CCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTA 363737 |||||| || || || ||||| | | || |||| | ||||| || | | ||| Sbjct 462715 CCAAGATGGCTGGTGGTATTGGCTTGAACGC-CCACCGAATCCGTGCCACTGG-CTCTTA 462772 Query 363738 CATTCGCGGCACAGGGGGATACT-CGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACA 363796 ||| ||| || || |||| | || || | ||||||||||| |||||||| ||| Sbjct 462773 CATCGCCGGTACCAATGG-TACTTCCAACGGTATCGTTCCCATGCTGCGTGTGTTCAACA 462831 Query 363797 ATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATC 363856 | ||||| | ||||| ||||||||||| ||||| || || || || || || | Sbjct 462832 ACACTGCTCGTTACGTTGACCAGGGTGGTAACAAGCGACCTGGTGCCTTCGCCATCTACC 462891 Query 363857 TCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA-CACGGGAAAA 363915 | || || || ||||| | || ||||| ||||| ||||| || || ||||| || Sbjct 462892 TTGAACCATGGCACGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAG- 462950 Query 363916 GAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAG 363975 ||||| | || || ||||| ||||||| || |||||| | |||| | ||| |||||| Sbjct 462951 GAGGAGGTCCGCGCTCGTGACCTGTTCTTAGCTCTTTGGATCCCTGATCTTTTCATGAAG 463010 Query 363976 CGCGTGGAG-GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTC 364034 || || ||| | | |||| || | ||| | ||||| ||||||| || || ||| | Sbjct 463011 CGTGTCGAGAGAAACGGCGAAT-GGACTCTCATGTGCCCTAACGAATGCCCTGGCCTTGC 463069 Query 364035 CGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGC 364094 || | |||||||| | || ||||| ||||||||||| || ||||| |||| Sbjct 463070 TGACTGCTACGGTGACGAATTTGAGGCTCTGTACGAAAAGTACGAGAGAGAGGGTAAGGG 463129 Query 364095 TCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGAC 364154 ||| ||| | || || ||||| || |||| ||||| | || | |||| ||||| Sbjct 463130 TCGCAAGTCTATCAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACAGAGAC 463189 Query 364155 AGGAACACCCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACC 364213 |||| ||||| | ||| | ||||| ||| ||||| |||||| ||||| || ||| Sbjct 463190 CGGAA-ACCCTTTCATGCTCTACAAGGATCACTGCAATCGCAAGAGTAACCAAAAGAACC 463248 Query 364214 TTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGAC 364272 ||||||| | || | || |||||| || || ||||| ||||||||| ||| || || Sbjct 463249 TTGGTACCA-TCCGAAGCTCCAACCTGTGCACTGAGATCATTGAATACTGCGCCCCTGAT 463307 Query 364273 GAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA------AAGAT 364326 ||| || || || |||||||| || | | || || | ||| | | ||||| Sbjct 463308 GAGGTCGCTGTTTGCAACCTTGCCTCCTTGTCTCTGCCCTCTTTTATCAACTATGAAGAT 463367 Query 364327 GGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGAC 364386 | | | ||| | || | || | || || || | || | ||||| | || Sbjct 463368 GCTTGCTACGACTTCAAGAAGCTGCACGAGGTCACTCAAGTTGTTGTCCGCAATTTGAAC 463427 Query 364387 AAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG----AGCGTTCTAATATGC 364441 ||| | |||||| || | || || | | || || || ||| || |||| Sbjct 463428 AAGATCATCGACGTCAACCACTACCCTGTCCAAGAGGCTCGTAACAGC-----AACATGC 463482 Query 364442 GTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGA 364501 |||| || || |||||||||||||| || || |||||||| | ||| | ||| | Sbjct 463483 GTCACCGACCCATTGGTCTTGGTGTGCAAGGTCTCGCTGATGCCTTTCTTGCCCTCCGCA 463542 Query 364502 TGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATT 364561 || | ||||| || ||||| ||||||| || || ||| | ||||| || || || || Sbjct 463543 TGCCCTTTGAGTCTCCTGAGGCTCGTGAGCTGAACAAGCAAATCTTCGAGACCATCTACC 463602 Query 364562 TTGCCGCAATGACTGCTTC-GTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTAT 364620 || || | ||| | || ||| | | | ||| | || || ||||| || | Sbjct 463603 ACGCTGCCCTTACTACGTCTGTGCAACTCGCCAAGGAGGAA-GGTCCCTACTCCACCTTC 463661 Query 364621 GAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCT 364680 |||| |||||| || |||| | ||||||| || | |||||||||| ||| ||| Sbjct 463662 AAGGGCTCCCCTGCCTCTGAGGGTATTCTCCAGTTCGACATGTGGAATGTCAAGCCCTCT 463721 Query 364681 GTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAAC--T 364738 | || ||| ||||||| | || || | || |||| || |||| |||||| | Sbjct 463722 GACCTTTGGGACTGGGAACCCCTCCGAGAGGATGTCAAGACTCACGGTATCCGCAACAGT 463781 Query 364739 C-CCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAG 364797 | |||||| || || ||||| || || ||| | ||||| || || |||||||| Sbjct 463782 CTGCTCGTT---GCTCCTATGCCTACCGCCAGTACCTCGCAGATTCTTGGCAACAACGAA 463838 Query 364798 TGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCG 364857 ||||| || || | || ||| | || |||||| || ||| | || || || | | Sbjct 463839 TGCTTTGAGCCTTACACCTCCAACATCTACCAACGCCGAGTCCTTGCTGGCGAGTTCCAG 463898 Query 364858 GTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATG 364917 || || || | || ||||||||||| |||| || || ||| || ||| Sbjct 463899 GTTGTCAACCCCTGGCTTCTCAAGGATCTTGTCGACATGGGTCTTTGGTCCGATGCTATG 463958 Query 364918 AAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGAT 364977 |||||| ||||| || | ||| |||||| | |||||||| || | || | || Sbjct 463959 AAGAACCGCATCATTGCTGATAACGGTTCTATCCAGAACATCCCCAACATCCCTGCCGAG 464018 Query 364978 CTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCG 365037 | ||| || | ||||| || || ||||| ||||| |||| | | | ||||| Sbjct 464019 ATCAAGGCTCTGTACAAGACTGTGTGGGAGATTTCTCAGCGACAGGTTGTGCAGATGGCT 464078 Query 365038 GCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCA 365097 || || || ||||| || || |||| ||||| | ||| | ||||| | || Sbjct 464079 GCTGACCGTGGTGCCTTCATTGATCAGTCTCAGTCTCTCAACATTCACATGAAGGACCCT 464138 Query 365098 ACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 ||| | |||| | || |||||| ||| || ||||| |||||| ||||| || Sbjct 464139 ACCATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTCAAGACTGG 464197 >seq291 Length=442874 Score = 98.7 bits (108), Expect = 3e-15 Identities = 310/468 (66%), Gaps = 23/468 (5%) Strand=Plus/Minus Query 22190 ACGAACAACATTTTATCAAATATATTCTAGCATTCTTTGCTACCGCAGACGGTATAGTTT 22249 |||| ||| | || ||| | ||||| || ||||| ||| || | ||||| || || Sbjct 1345 ACGAGCAATACTTCATCTCCCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATCGTCA 1286 Query 22250 TTGAGAATCTAGT-GACTAATTTTGCATCTGAAATTCAATACCCAGAGGCCAGATGTTTC 22308 ||||||||| || || ||| || | || | || ||| ||||| |||| ||| Sbjct 1285 ATGAGAATCTTGTTGAGCGATTCAGCGGC-GAGGTCCAGATCCCCGAGGCTCGATGCTTC 1227 Query 22309 TATGGTGTGCAAATGATGATTGAAAATGTTCACGCGGAAACATATTCTATGATGCTACAG 22368 |||||| | || || ||||| || || | ||| | |||||||| || || | Sbjct 1226 TATGGTTTCCAGATCATGATGGAGAACATCCACTCCGAAACATACTCC------CTCC-- 1175 Query 22369 TCACTCG-TAGA-AGATAAAG-AC---GAACAACGAA---ACTTATTCCGCGCGATTCGC 22419 ||| ||| || | || ||| || | || || | || | ||| ||| || | Sbjct 1174 TCA-TCGATACCTACATCAAGGACCCTGCCCAGCGTACATACCTCTTCAACGCCGTTGAC 1116 Query 22420 ACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAAT--GAAC 22477 || |||| | || || ||||| |||||||| | |||||| | || |||| Sbjct 1115 ACTATTCCTTGCATCCGAAAGAAGGCGGATTGGGCCATCCGATGGATCCAGGATAAGAAC 1056 Query 22478 GTT-CATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGA 22536 | | ||||| | |||||| |||| ||||||| ||||| || || ||||| || Sbjct 1055 TCTACCTTCGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGT 996 Query 22537 GCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCA 22596 || ||| | | ||||| ||||| || || |||| | ||||| ||||| | ||||| Sbjct 995 GCCTTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCT 936 Query 22597 AATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644 || ||| | ||| || || ||||||||||| ||||| ||||| ||| Sbjct 935 AACGAGCTCATTTCTCGTGACGAGGGTCTTCACACCGACTTTGCCTGT 888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303348540136946