Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717905.1_202016-08-31]
303 sequences; 36,666,367 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq189 116 3e-21
seq187 107 2e-18
seq241 86.0 5e-12
>seq189
Length=836686
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || || || | || || || ||| |||| ||||| ||||| | ||
Sbjct 312564 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 312505
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | |||| || || || |||||||||||||| || || || ||
Sbjct 312504 GACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 312445
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || ||||| ||||| || || ||| | |||||| ||||||| | ||| ||||||
Sbjct 312444 CAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAAC 312385
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427
|| || || || |||||| | || || ||
Sbjct 312384 ATCCAGAAGGAGTCCACCCTTCACTTGGT 312356
>seq187
Length=1074518
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || ||||| || || | || || || || || | |
Sbjct 440576 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACTATTACCCTCGAGGTTGAGTCATCT 440517
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | ||| | |||| || ||||| ||||||||||| || || || |||||
Sbjct 440516 GATACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAG 440457
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || || |||||||| ||| | |||||| ||||||| ||||||||||||||
Sbjct 440456 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGATTACAAC 440397
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || || || ||
Sbjct 440396 ATCCAGAAGGAGTCGAC 440380
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || || | || || || || |||| || || || || | ||
Sbjct 440348 ATGCAAATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGTCATCC 440289
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || | || || || || ||||||||||| || || || |||||
Sbjct 440288 GACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCAG 440229
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || || |||||||| ||| | |||||| ||||||| ||||||| ||||||
Sbjct 440228 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 440169
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || || || ||
Sbjct 440168 ATCCAGAAGGAGTCGAC 440152
Score = 96.9 bits (106), Expect = 3e-15
Identities = 133/186 (72%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290
|| || || || ||||| || || |||| ||||| || || | |||| || | |||
Sbjct 440054 GTCAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCATCCGACACTATCGAC 439995
Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350
| |||| || || || |||||||||||||| || || ||||| || || | ||
Sbjct 439994 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATT 439935
Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410
|| |||||||| ||| | ||||| || ||| ||||||| |||||||| || || |||
Sbjct 439934 TTCGCCGGCAAGCAGCTCGAGGACGGTCGAACCCTCTCCGACTACAACATCCAGAAGGAA 439875
Query 22411 TCCACC 22416
|| |||
Sbjct 439874 TCAACC 439869
>seq241
Length=404015
Score = 86.0 bits (94), Expect = 5e-12
Identities = 127/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286
||| || || || | || || || || |||| || || || || | | || ||| |
Sbjct 300559 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCAT 300618
Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346
||| || |||| || || || ||||||||||| || || || ||||| || || |
Sbjct 300619 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATT 300678
Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| || |||||||| ||| | |||||| ||| ||| ||||||| |||||||| || ||
Sbjct 300679 GATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAA 300738
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419726450023195
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |