Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717905.1_202016-08-31]
303 sequences; 36,666,367 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq291 111 3e-19
seq286 98.7 2e-15
seq47 95.1 2e-14
seq38 84.2 4e-11
>seq291
Length=442874
Score = 111 bits (122), Expect = 3e-19
Identities = 397/615 (65%), Gaps = 17/615 (3%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| | || ||||| ||||||||||||||| ||||| |||
Sbjct 622 TCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAAGGGTTGGTG 681
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
| |||||| ||| | ||| || || |||| || || || || || || || |
Sbjct 682 GACTTGTACACCTTCTCGTTGCCGAGAGCAACGAGGAGACGATCAGCGACGAATTCGATG 741
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| ||| || | ||||||||||| | || |||||| | |||||| |
Sbjct 742 TACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGGGCACAAGGGAGAGCCTCAGTAAGA 801
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798
|| |||| || | | ||| || || | ||| ||| ||| ||| | | | |
Sbjct 802 AACTCCTGCTCAATAGAAACGGCATCGGTGATAATGTCCTGGATCATCTGTTTGCTGGCA 861
Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858
| | || || | |||| ||||| | |||| | ||| |||||||||||
Sbjct 862 CGTC----CCTTGAGGTGAGAGTGGAGGAGACAGGCAAAGTCGGTGTGAAGACCCTCGTC 917
Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918
||| |||| |||||| || | | ||| |||||||| | ||||| ||| |||||||
Sbjct 918 ACGAGAAATGAGCTCGTTAGAAAAGCTCAGACCAGGCATGAGGCCACGCTTCTTGAGCCA 977
Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978
|||||| | ||||| || ||| | | |||||| || | | ||||||||
Sbjct 978 GAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGCAGCAAAAGCAACAAG 1037
Query 251979 GCGCTCAGCAAACG------ACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTT 252032
|||| ||| || | ||| ||||| || | | || ||||| | |||||
Sbjct 1038 ACGCTGAGCGAAGGTAGAGTTCTTATCCTG-GA-TCCATCGGATG-GCCCAATCCGCCTT 1094
Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092
||||| | || || || || | || | ||||| | | |||| |||| |||
Sbjct 1095 CTTTCGGATGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTACGCTGGGCAGGGTC 1154
Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACAT 252152
|| |||| | ||| | ||||| ||||| | || || |||||| || | | ||
Sbjct 1155 CTTGATGTAGGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGTTCTCCATCATGAT 1214
Query 252153 CTGGTAAGCATAGAA 252167
|||| || |||||||
Sbjct 1215 CTGGAAACCATAGAA 1229
>seq286
Length=846385
Score = 98.7 bits (108), Expect = 2e-15
Identities = 138/192 (72%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754
||| || |||||||| || |||||||||||||||||||| | | || || || || |
Sbjct 450945 AGTTGGATCTCTGTCTGGAGGTTGGAAGATGAAGCTGGCTTTGGCCCGTGCTATGCTGCA 451004
Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814
||| || |||||||| || ||||| || || || ||||| | ||| ||||| | ||
Sbjct 451005 GCGCGCTGATGTCCTTCTTCTTGACGAACCTACTAACCATCTTGACGTTGCCAACATTGC 451064
Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCTCAC 279872
||||| | | |||||| | ||||| | | || | || ||||| ||||||
Sbjct 451065 ATGGCTCGAGAACTACCT--CAAGTCTCACCCCGACATTACCAGTCTTATTGTTTCTCAC 451122
Query 279873 GACTCTGGCTTC 279884
||||||||||||
Sbjct 451123 GACTCTGGCTTC 451134
>seq47
Length=351353
Score = 95.1 bits (104), Expect = 2e-14
Identities = 158/226 (70%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
||||||||||| || ||||| ||||| || || || |||| |||||||| || |||
Sbjct 236005 GGTGAGGATCTTTGCAACTGTACATTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 236064
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|| | |||| |||||||||| | || || ||||| |||||||| || |
Sbjct 236065 CAGACTCACCTCCGTCTCAAGCGTGGTCAGCGTTACGGTCTTTGTGGTCCCAACGGTTCC 236124
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| ||| || ||||||||||| |||| ||| | | ||| ||||| | |||
Sbjct 236125 GGAAAGTCCACCCTCATGCGCGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 236183
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569
||||| | ||| || | || ||||||||| | |||||| ||
Sbjct 236184 GGACGAGGTCAAGACTGTCTTCGTCGAGCACGACTTGGACTCCGCT 236229
>seq38
Length=1092239
Score = 84.2 bits (92), Expect = 4e-11
Identities = 230/350 (66%), Gaps = 3/350 (1%)
Strand=Plus/Minus
Query 294089 CCTTCCCCTCAGACTCATACTTGGTGTAAAGCTCTTCGTATTCCTTGCCATATACATCAG 294148
|||| ||||| ||| ||||| ||| || | || |||| | || || ||||
Sbjct 463128 CCTTACCCTCTCTCTCGTACTTTTCGTACAGAGCCTCAAATTCGTCACCGTAGCAGTCAG 463069
Query 294149 ACAGGCCAGGGCACTCGTGAGGGTCAAGTAGAGACCACTGGGCATCAGTCTCCACGCGCT 294208
||||||||||| |||| |||| | |||| ||| | | | | |||| || ||||
Sbjct 463068 CAAGGCCAGGGCATTCGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCT 463009
Query 294209 TCATGAATAGATCATTGACCCACATTGCGTAAAACAAGTTGCGGGCGCGCAGGCTCTCCT 294268
||||||| |||||| || ||| | || | |||| || || ||||| | |||||
Sbjct 463008 TCATGAAAAGATCAGGGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCT 462949
Query 294269 CACCTTGATTACGACGGAGGAGCAGGAAGTCCATGATGTCGGGATGATGGGGTTCCAGAT 294328
||| ||||| ||||| ||||| || | || ||||| || ||||| || |
Sbjct 462948 TACCGTGATTCTTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGTTCAAGGT 462889
Query 294329 ACACAGCAAAGG-ACCCCTT--CCTGCGTCCCCCCTGGTTGGCGTAGGCAGATGTGGTGT 294385
| | || |||| ||| | | || || ||||||| |||| || ||| |||
Sbjct 462888 AGATGGCGAAGGCACCAGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGT 462829
Query 294386 CAAACACCTTCAGCATAGGCACGATGCCATCGGACTCACCATTGGTTCCG 294435
||||| |||||| || ||||| || | ||| ||||||||| |||
Sbjct 462828 TGAACACACGCAGCATGGGAACGATACCGTTGGAAGTACCATTGGTACCG 462779
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027832809744823
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |