Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717905.1_202016-08-31]
303 sequences; 36,666,367 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq189 122 9e-23
seq291 89.7 5e-13
>seq189
Length=836686
Score = 122 bits (134), Expect = 9e-23
Identities = 144/195 (74%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||||||| || || |||||||| || ||||| | |
Sbjct 312371 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCA 312430
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || ||||| |||||||| || ||||| || ||||| ||| || || |
Sbjct 312431 AAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACG 312490
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||||| ||||||||||| | || | ||| || || || || || ||
Sbjct 312491 TTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTG 312550
Query 138601 ACAAAAATCTGCATG 138615
|| ||||||||||||
Sbjct 312551 ACGAAAATCTGCATG 312565
>seq291
Length=442874
Score = 89.7 bits (98), Expect = 5e-13
Identities = 258/392 (66%), Gaps = 19/392 (5%)
Strand=Plus/Minus
Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504
|||||| ||||||| | | || | | ||| | ||||| || |||| || ||
Sbjct 993 CTTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCTAA 934
Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTG---CCTCTACT---A 52558
|||| | || || || ||||| || || ||||| |||||||| || |||| ||| |
Sbjct 933 CGAGCTCATTTCTCGTGACGAGGGTCTTCACACCGACTTTGCCTGTCTCCTCCACTCTCA 874
Query 52559 CAAGACGCG-CGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGG 52617
| | | | |||| | | ||| ||| ||||| | ||| ||| || |
Sbjct 873 CCTCAAGGGACGTGCCAGCAAACA--GAT--------GATCCAGGACATTATCACCGATG 824
Query 52618 CGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGA 52677
| || |||| || |||||||| |||| | || || || | ||||| |||||||
Sbjct 823 CCGTTTCTATTGAGCAGGAGTTTCTTACTGAGGCTCTCCCTTGTGCCCTGCTCGGCATGA 764
Query 52678 ACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG 52737
|| | | |||| |||||||||| || || || |||||||| | || ||||
Sbjct 763 ACTCCAACCTCATGAAGCAGTACATCGAATTCGTCGCTGATCGTCTCCTCGTTGCTCTCG 704
Query 52738 GGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTT 52796
| || | | ||| | ||| | ||| || || || || ||| | ||||| || |||
Sbjct 703 G-CAACGAGAAGGTGTACAAGTCCACCAACCCTTTCGACTTCATGGAGAACATCTCCCTT 645
Query 52797 GAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828
| |||||||||||||| ||||||||||| ||
Sbjct 644 GGCGGCAAGACCAACTTCTTCGAGAAGCGCGT 613
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496260520406160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |