Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717905.1_202016-08-31] 303 sequences; 36,666,367 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq38 138 1e-27 seq291 136 5e-27 >seq38 Length=1092239 Score = 138 bits (152), Expect = 1e-27 Identities = 1075/1711 (63%), Gaps = 71/1711 (4%) Strand=Plus/Minus Query 115549 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 115608 |||| || |||||||||||||| || |||||||| || |||||||| || | ||| Sbjct 464221 GCCTGTGTACGGAGGTAGTACATGCCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGC 464162 Query 115609 ATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGA 115668 || || | |||| | || || | |||| | ||| | | || || ||| Sbjct 464161 ATGCTGGTGATCTTGCCCATGGTAGGGTCCTTCATGTGAATGTTGAGAGACTGAGACTGA 464102 Query 115669 TCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCC 115725 || |||||| || || || || ||||| | |||| ||| || || ||| Sbjct 464101 TCAATGAAGGCACCACGGTCAGCAGCCATCTG---CACAACCTGTCGCTGAGAAATCTCC 464045 Query 115726 CACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAG 115785 |||||||| |||| || ||| || || | ||||| | ||| || |||||||| Sbjct 464044 CACACAGTCTTGTACAGAGCCTTGATCTCGGCAGGGATGTTGGGGATGTTCTGGATAGAA 463985 Query 115786 CC---ACCTGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTG 115842 || | | || ||| || | | ||||||| | | ||||| ||||| || | Sbjct 463984 CCGTTATCAGCAATGA---TGCGGTTCTTCATAGCATCGGACCAAAGACCCATGTCGACA 463928 Query 115843 AGATCCTCCA----CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCT 115898 ||||||| | | ||| | |||||||| ||||| || || ||| || | Sbjct 463927 AGATCCTTGAGAAGCCAGGGG----TTGACAACCTGGAACTCGCCAGCAAGGACTCGGCG 463872 Query 115899 CAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGT 115958 | |||||||||| ||||| ||||||||||| || ||||| || | || || | || Sbjct 463871 TTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCATTCGTTGTTGCCAAGAATCTGCGAGGT 463812 Query 115959 GGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCG 116018 ||| || ||||| || || | ||| || |||||||||| ||| | | | Sbjct 463811 ACTGGCGGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGTCTTGACATC 463752 Query 116019 TTCCTTGAGGGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTCCCACATATCAAAC 116076 || ||||| |||||||| | | | || | || | | |||||| || ||| Sbjct 463751 CTCTCGGAGGGGTTCCCAGTCCCAAAGGTCAGAG--GGCTTGACATTCCACATGTCGAAC 463694 Query 116077 TGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC 116136 ||||| ||||| | || || || || |||| || || || || || || ||| Sbjct 463693 TGGAGAATACCCTCAGAGGCAGGGGAGCCCTTGAAGGTGGAGTAGGGACCTTCCTCCTTG 463634 Query 116137 GCCAATT-CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATT 116195 || | || | || || ||||| ||||| || || ||||| || || | || Sbjct 463633 GCGAGTTGCACAGA-CGTAGTAAGGGCAGCGTGGTAGATGGTCTCGAAGATTTGCTTGTT 463575 Query 116196 CATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAG 116255 || | ||||| || ||||| | | ||| || ||| |||| ||||| Sbjct 463574 CAGCTCACGAGCCTCAGGAGACTCAAAGGGCATGCGGAGGGCAAGAAAGGCATCAGCGAG 463515 Query 116256 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCAC 116315 |||||| ||||| || ||||| || || || | ||| || || ||||| | || Sbjct 463514 ACCTTGCACACCAAGACCAATGGGTCGGTGACGCATGTTGCTGTTACGAGCCTCTTGGAC 463455 Query 116316 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 116375 || || || ||||| | | | || | ||| | ||||| | |||| || Sbjct 463454 AGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAACAACTTGAGTGACCTC 463395 Query 116376 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TGACATACTTAGGAAGGGC 116432 || ||||| | | | || | || || ||||||| ||| | | || || | Sbjct 463394 GTGCAGCTTCTTGAAGTCGTA---GCAAGCATCTTCATAGTTGATAAAAGAGGGCAGAGA 463338 Query 116433 GATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGT 116492 | || || || || || |||| | |||||| | ||| || || || || || Sbjct 463337 CAAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGT 463278 Query 116493 ACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACT-TTGTG-TTACAC 116550 |||| || || || ||||| || | ||||||||| || ||| ||| | || || Sbjct 463277 GCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTT--ACTCTTGCGATTGCAG 463220 Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610 ||||||||||||||| | || | || ||||| || |||| || ||||| || | | Sbjct 463219 TGATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTAC 463160 Query 116611 CATACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTT 116663 || | | | | | || | | | ||| || |||| |||| ||||||||| Sbjct 463159 CAAAGTTTCTGAGCCTTGA----TAGACTTG---CGACCCTTACCCTCTCTCTCGTACTT 463107 Query 116664 TGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTATCT- 116721 | ||| || |||||||| || ||||| ||| || | || || || || || | Sbjct 463106 TTCGTACAGAGCCTCAAATTCGTCACCGT-AGCAGTCAGCAAGGCCAGG-GCATTCGTTA 463049 Query 116722 GGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATC 116781 || || | ||||| ||||| || ||| || ||||||||||| || || |||||| Sbjct 463048 GGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATC 462989 Query 116782 CAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 116841 || || || |||| || || ||| ||| | || || | || ||||| || | Sbjct 462988 CAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGA 462929 Query 116842 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC----- 116895 || | || || | || || |||||||| ||||| ||||| | |||| | || Sbjct 462928 TCAAGGAACTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCACCAGGT 462869 Query 116896 CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATT 116955 | |||| |||| |||||| || || | || || ||| || || || ||||| Sbjct 462868 CGCTTG---TTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATG 462812 Query 116956 GGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGA 117013 |||| |||||| | || ||||| || || ||| || ||| | |||| | || Sbjct 462811 GGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCC--AGTGGCACGGA 462754 Query 117014 CATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGA 117073 |||| || || |||||||| || ||| ||| || || || || | ||| Sbjct 462753 TTCGGTGGGCGTTCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGA 462694 Query 117074 GACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACA 117133 | | ||||||| ||||| || ||| |||| | | | |||||||| || | Sbjct 462693 GGGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAA 462634 Query 117134 TTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTT 117193 || ||| ||| ||||| |||||||| | || || | || || ||| | | ||| Sbjct 462633 GCTGAGGCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGA--AGAACTT 462576 Query 117194 G--GGACATCTTATCGTAGGTCTCCAAGACA 117222 | ||||| | ||| |||||||||||| Sbjct 462575 GCTTGACATGAGGTTGTATGTCTCCAAGACA 462545 >seq291 Length=442874 Score = 136 bits (150), Expect = 5e-27 Identities = 532/824 (65%), Gaps = 37/824 (4%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| | || ||||||||||||||||| ||||| || | ||| ||| |||||||| Sbjct 603 GTAGTCAGCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCAT 662 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGC-ACCCCAATCTGTTTGAG 127344 || || || ||||| | || || | | | |||| | | ||| ||| Sbjct 663 GAAGTCGAAAGGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCAAC------GAG 716 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 ||||||||| | |||| | || ||||||| ||| | |||||||| |||| || Sbjct 717 GAGACGATCAGCGACGAATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAG 776 Query 127405 GTTACATGGGAGCGCGTCC--AAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACG 127462 | ||| ||||| || || |||| ||| ||| |||||| || || || | Sbjct 777 GGCACAAGGGAGAGCCTCAGTAAGA--AACTCCTGCTCAATAGAAACGGCATCGGTGATA 834 Query 127463 ATGGCGTGAATAGTGTCCACCC---CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACA 127519 ||| | || || | | | || ||| ||| | || | || ||| ||| Sbjct 835 ATGTCCTGGATCATCTGTTTGCTGGCACGTCCCTTGAGGTGAGAGTGGAGGAG----ACA 890 Query 127520 G-CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 | |||| || ||| |||||||||||||| || ||||| || || || |||| |||||| Sbjct 891 GGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAAATGAGCTCGTTAGAAAAGCTCAGACC 950 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 |||||||| || |||||||| | |||||| || | | ||| | || ||||||||| Sbjct 951 AGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGAT 1010 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC--- 127695 ||||| || || || |||| ||||||| || |||| || || |||| Sbjct 1011 ACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGG---TAGAGTTCTTATCCTG 1067 Query 127696 AAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTC 127755 | ||| || ||||| | ||||| || ||| || || | || | | || | Sbjct 1068 GATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTT 1127 Query 127756 AAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGT 127815 ||||| | | | | || || |||||||| |||| ||||| || ||||| Sbjct 1128 GAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGT 1187 Query 127816 TTCGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTA 127874 |||| ||||| | | ||| || | ||| | | ||||| | || || ||| | Sbjct 1188 TTCGGAGTGGATGTTCTCCATCAT-GATCTGGAAACCATAGAAGCATCGAGCCTCGGGGA 1246 Query 127875 TCTGTACCTCATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCA 127933 |||| ||||| | || ||| | | | | ||||||| || || || ||||| || Sbjct 1247 TCTGGACCTC-GCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGCA 1305 Query 127934 GCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTC 127990 || || || || || || | ||||| | || || | ||| || | ||| Sbjct 1306 GCGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTTC 1365 Query 127991 CAGTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 ||||||| ||||||||| |||||||| | |||||| || ||||| Sbjct 1366 CAGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCA 1409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504876341480