Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717905.1_202016-08-31] 303 sequences; 36,666,367 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq38 212 7e-50 seq85 163 3e-35 seq291 82.4 9e-11 >seq38 Length=1092239 Score = 212 bits (234), Expect = 7e-50 Identities = 1009/1588 (64%), Gaps = 49/1588 (3%) Strand=Plus/Minus Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGG 109566 |||||||||||||| ||||| |||||| ||||| ||||| | | | | | | | Sbjct 464113 GACTGAGACTGATCAATGAAGGCACCACGGTCAGCAGCCATCTGCACAA----CCTGTCG 464058 Query 109567 CT----AATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGAT 109622 || ||| ||||| ||||||||||||| | |||||| || | || |||| ||| Sbjct 464057 CTGAGAAATCTCCCACACAGTCTTGTACAGAGCCTTGATCTCGGCAGGGATGTTGGGGAT 463998 Query 109623 GTTTTGAATAGAGCC---ACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAG 109679 ||| || ||||| || | |||| | | || | | |||||| | | ||||| || Sbjct 463997 GTTCTGGATAGAACCGTTATCAGCAATGA---TGCGGTTCTTCATAGCATCGGACCAAAG 463941 Query 109680 ACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAG 109739 ||| | | ||||| | | ||| |||||| || || || |||||||| Sbjct 463940 ACCCATGTCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAG 463881 Query 109740 TGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGAT 109799 || || |||||||||| | ||||| || || || || || |||||||| || || Sbjct 463880 GACTCGGCGTTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCATTCGTTGTTGCCAAGAAT 463821 Query 109800 TTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGT 109859 || | || || || ||||| ||||| | ||| |||||||| |||| ||| | || Sbjct 463820 CTGCGAGGTACTGGCGGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGT 463761 Query 109860 CTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATC 109919 ||| || ||| || | | ||||| || || | || | || ||| Sbjct 463760 CTTGACATCCTCTCGGAGGGGTTCCCAGTCCCAAAGGTCAGAG------GGCTTGACATT 463707 Query 109920 CCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGA 109979 |||||| || || || | |||||||| ||||| || |||||||| | ||| | Sbjct 463706 CCACATGTCGAACTGGAGAATACCCTCAGAGGCAGGGGAGCCCTTGAAGGTGGAGTAGGG 463647 Query 109980 CCCCTCAACCTCGGCCAACT---CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTC 110036 || || ||| ||| | | | || | || || || || || || || ||||| Sbjct 463646 ACCTTCCTCCTTGGCGAGTTGCACAGACGTAGTA---AGGGCAGCGTGGTAGATGGTCTC 463590 Query 110037 AAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAAT 110096 || || || |||| |||| ||| | | || ||||| | | || Sbjct 463589 GAAGATTTGCTTGTTCAGCTCACGAGCCTCAGGAGACTCAAAGGGCATGCGGAGGGCAAG 463530 Query 110097 AAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCG 110156 ||| |||| || ||||| || ||||| ||||||||||| || || |||||| | Sbjct 463529 AAAGGCATCAGCGAGACCTTGCACACCAAGACCAATGGGTCGGTGACGCATGTTGCTGTT 463470 Query 110157 TCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCAC 110216 ||||| || || ||||| |||| |||||||| | || | ||| || Sbjct 463469 ACGAGCCTCTTGGACAGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAAC 463410 Query 110217 AGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA-TTGACAT 110275 | | |||| || || || || | | | ||| | | | ||| | || |||| | Sbjct 463409 AACTTGAGTGACCTCGTGCAGCTTCTTGAAGTCGTA-GCAAGCATCTTCATAGTTGATAA 463351 Query 110276 ATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATT 110335 | ||| |||| | || ||||| ||||| |||| ||| || | || ||||| Sbjct 463350 AAGAGGGCAGAGACAAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATT 463291 Query 110336 CCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATT 110395 | | || || || |||| |||||| || ||| ||| | |||||| || || | Sbjct 463290 CAATGATCTCAGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCT 463231 Query 110396 TGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGA 110455 || ||||| |||||| ||||||||| | ||| | || || || ||||| | || | Sbjct 463230 TGCGATTGCAGTGATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAA 463171 Query 110456 GAATGGCCTTCCATACATCGGCGGCGGGGACAG--TTGCGTTAGCGAGACCTTCCTCCTC 110513 ||||||| | ||| | | || || || ||||| | | ||| || ||| Sbjct 463170 GAATGGCGTACCAAAGTTTCTGAGCCTTGATAGACTTGCG--ACCCTTACCCTCTCTCTC 463113 Query 110514 GTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTT 110573 |||||| ||||| |||||||||| | ||||| |||| ||| || || || Sbjct 463112 GTACTTTTCGTACAGAGCCTCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGG-GCATT 463054 Query 110574 -GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAG 110632 || || || | ||| | ||| | || ||| || | ||||||||| || |||| Sbjct 463053 CGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAG 462994 Query 110633 GAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGC 110692 | ||||| | || |||| |||||||| || |||| || | ||| || || | Sbjct 462993 GGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTC 462934 Query 110693 GTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATC 110752 | || || | || || | || || | |||||||||||| || |||| |||| || | Sbjct 462933 GGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCAC 462874 Query 110753 CCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGA 110806 | | | || ||| |||||| ||| || || || ||| ||||| || | | Sbjct 462873 C---AGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCA 462817 Query 110807 GCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCAC 110866 |||| |||| || || | ||| |||||| ||||| || || | |||||| Sbjct 462816 GCATGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCAC 462757 Query 110867 GAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC-ACTCT 110925 | || |||| | || ||||||||||| ||| ||| ||| |||| | ||| Sbjct 462756 GGATTCGGTGGGCGTTCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCT 462697 Query 110926 GTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAA 110985 |||| ||| | || ||||||||||| || |||| | ||| || ||||| || Sbjct 462696 -TGAGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGAT 462638 Query 110986 GACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGA 111045 || | |||||| | || || || || ||||| | || || | |||||| ||| ||| Sbjct 462637 GAAAGCTGAGGCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGA--AGA 462580 Query 111046 CCTTG--GGACATCTTGTTGTATGTGTC 111071 |||| ||||| ||||||||| || Sbjct 462579 ACTTGCTTGACATGAGGTTGTATGTCTC 462552 >seq85 Length=62913 Score = 163 bits (180), Expect = 3e-35 Identities = 321/464 (69%), Gaps = 22/464 (5%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| || || || || | ||||| | || || ||||| | ||||| ||| | Sbjct 1253 CGATCGAATCGTCCAGGTCGCATCAGAGCCTTGTCCAGCATATCCGCTCGGTTAGTACCA 1312 Query 11563 GCAATGACTACAATGCCAGT-CTC-ATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620 |||| ||| || | || || ||| | ||| ||| || |||||||| || |||| ||||| Sbjct 1313 GCAAGGACGACCA--CCTGTTCTCGAGTGTTGAAGCCATCCATTTCCGTAAGAATCTGGT 1370 Query 11621 TGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTTAC--- 11677 | | |||| |||||| || ||||| | | ||| | ||||| | ||| | | Sbjct 1371 TCAGCGTCGCTTCACGTTCGTCGTTACCGCCAAAACC-CTTGCCGCTCTCTTGTCGCGCG 1429 Query 11678 CGACA----GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733 |||| || |||||||| ||||| || | ||| || || ||| ||| ||| Sbjct 1430 CGACCAATGGCATCAATCTCGTCGATAAAGATGATGCAAGGGGCGTTCTTACGGCCCTCG 1489 Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG-- 11791 |||| || || ||||||||| | ||||||||| || |||||||||||||| | | Sbjct 1490 GCGAACAGATCTCGTACACGCGAAGGTCCAACACCGACAAACATCTCAACGAATTCGGAA 1549 Query 11792 CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851 | || |||||||| |||||| || ||||||||| || |||| || || | | Sbjct 1550 CCGC-TCACACTGAA-GAAGGGTACTCCAGACTCACCTGCCGTGGCCTTGGCAAGCAACG 1607 Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC---AC 11908 ||||||| ||||| || | ||||| | || || || || |||||||||||||| Sbjct 1608 TCTTACCAGTACCGGGGGGCCCAGCCAAAATAGCACCTCGTGGGATCTTGGCACCTAGCT 1667 Query 11909 TTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 || |||| | |||||||| ||| | |||| ||||| |||| Sbjct 1668 TTTCAAACT---TCTCAGGCTGCTTCAAGAAGCTCACAAACTCC 1708 >seq291 Length=442874 Score = 82.4 bits (90), Expect = 9e-11 Identities = 119/167 (71%), Gaps = 1/167 (1%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || ||||| || || || ||||| |||||||| ||| |||| || || Sbjct 891 GGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAAATGAGCTCGTTAGAAAAGCTCAGACC 950 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| || | ||||| ||||| ||||||| | ||| || |||||||| Sbjct 951 AGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGAT 1010 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG 119661 ||||| || || ||||| | ||||||| ||| ||||| ||| Sbjct 1011 ACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGC-GAAGGTAGAG 1056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973769253400