Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717905.1_202016-08-31]
303 sequences; 36,666,367 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq38 212 7e-50
seq85 163 3e-35
seq291 82.4 9e-11
>seq38
Length=1092239
Score = 212 bits (234), Expect = 7e-50
Identities = 1009/1588 (64%), Gaps = 49/1588 (3%)
Strand=Plus/Minus
Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGG 109566
|||||||||||||| ||||| |||||| ||||| ||||| | | | | | | |
Sbjct 464113 GACTGAGACTGATCAATGAAGGCACCACGGTCAGCAGCCATCTGCACAA----CCTGTCG 464058
Query 109567 CT----AATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGAT 109622
|| ||| ||||| ||||||||||||| | |||||| || | || |||| |||
Sbjct 464057 CTGAGAAATCTCCCACACAGTCTTGTACAGAGCCTTGATCTCGGCAGGGATGTTGGGGAT 463998
Query 109623 GTTTTGAATAGAGCC---ACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAG 109679
||| || ||||| || | |||| | | || | | |||||| | | ||||| ||
Sbjct 463997 GTTCTGGATAGAACCGTTATCAGCAATGA---TGCGGTTCTTCATAGCATCGGACCAAAG 463941
Query 109680 ACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAG 109739
||| | | ||||| | | ||| |||||| || || || ||||||||
Sbjct 463940 ACCCATGTCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAG 463881
Query 109740 TGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGAT 109799
|| || |||||||||| | ||||| || || || || || |||||||| || ||
Sbjct 463880 GACTCGGCGTTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCATTCGTTGTTGCCAAGAAT 463821
Query 109800 TTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGT 109859
|| | || || || ||||| ||||| | ||| |||||||| |||| ||| | ||
Sbjct 463820 CTGCGAGGTACTGGCGGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGT 463761
Query 109860 CTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATC 109919
||| || ||| || | | ||||| || || | || | || |||
Sbjct 463760 CTTGACATCCTCTCGGAGGGGTTCCCAGTCCCAAAGGTCAGAG------GGCTTGACATT 463707
Query 109920 CCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGA 109979
|||||| || || || | |||||||| ||||| || |||||||| | ||| |
Sbjct 463706 CCACATGTCGAACTGGAGAATACCCTCAGAGGCAGGGGAGCCCTTGAAGGTGGAGTAGGG 463647
Query 109980 CCCCTCAACCTCGGCCAACT---CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTC 110036
|| || ||| ||| | | | || | || || || || || || || |||||
Sbjct 463646 ACCTTCCTCCTTGGCGAGTTGCACAGACGTAGTA---AGGGCAGCGTGGTAGATGGTCTC 463590
Query 110037 AAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAAT 110096
|| || || |||| |||| ||| | | || ||||| | | ||
Sbjct 463589 GAAGATTTGCTTGTTCAGCTCACGAGCCTCAGGAGACTCAAAGGGCATGCGGAGGGCAAG 463530
Query 110097 AAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCG 110156
||| |||| || ||||| || ||||| ||||||||||| || || |||||| |
Sbjct 463529 AAAGGCATCAGCGAGACCTTGCACACCAAGACCAATGGGTCGGTGACGCATGTTGCTGTT 463470
Query 110157 TCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCAC 110216
||||| || || ||||| |||| |||||||| | || | ||| ||
Sbjct 463469 ACGAGCCTCTTGGACAGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAAC 463410
Query 110217 AGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA-TTGACAT 110275
| | |||| || || || || | | | ||| | | | ||| | || |||| |
Sbjct 463409 AACTTGAGTGACCTCGTGCAGCTTCTTGAAGTCGTA-GCAAGCATCTTCATAGTTGATAA 463351
Query 110276 ATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATT 110335
| ||| |||| | || ||||| ||||| |||| ||| || | || |||||
Sbjct 463350 AAGAGGGCAGAGACAAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATT 463291
Query 110336 CCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATT 110395
| | || || || |||| |||||| || ||| ||| | |||||| || || |
Sbjct 463290 CAATGATCTCAGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCT 463231
Query 110396 TGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGA 110455
|| ||||| |||||| ||||||||| | ||| | || || || ||||| | || |
Sbjct 463230 TGCGATTGCAGTGATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAA 463171
Query 110456 GAATGGCCTTCCATACATCGGCGGCGGGGACAG--TTGCGTTAGCGAGACCTTCCTCCTC 110513
||||||| | ||| | | || || || ||||| | | ||| || |||
Sbjct 463170 GAATGGCGTACCAAAGTTTCTGAGCCTTGATAGACTTGCG--ACCCTTACCCTCTCTCTC 463113
Query 110514 GTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTT 110573
|||||| ||||| |||||||||| | ||||| |||| ||| || || ||
Sbjct 463112 GTACTTTTCGTACAGAGCCTCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGG-GCATT 463054
Query 110574 -GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAG 110632
|| || || | ||| | ||| | || ||| || | ||||||||| || ||||
Sbjct 463053 CGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAG 462994
Query 110633 GAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGC 110692
| ||||| | || |||| |||||||| || |||| || | ||| || || |
Sbjct 462993 GGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTC 462934
Query 110693 GTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATC 110752
| || || | || || | || || | |||||||||||| || |||| |||| || |
Sbjct 462933 GGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCAC 462874
Query 110753 CCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGA 110806
| | | || ||| |||||| ||| || || || ||| ||||| || | |
Sbjct 462873 C---AGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCA 462817
Query 110807 GCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCAC 110866
|||| |||| || || | ||| |||||| ||||| || || | ||||||
Sbjct 462816 GCATGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCAC 462757
Query 110867 GAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC-ACTCT 110925
| || |||| | || ||||||||||| ||| ||| ||| |||| | |||
Sbjct 462756 GGATTCGGTGGGCGTTCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCT 462697
Query 110926 GTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAA 110985
|||| ||| | || ||||||||||| || |||| | ||| || ||||| ||
Sbjct 462696 -TGAGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGAT 462638
Query 110986 GACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGA 111045
|| | |||||| | || || || || ||||| | || || | |||||| ||| |||
Sbjct 462637 GAAAGCTGAGGCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGA--AGA 462580
Query 111046 CCTTG--GGACATCTTGTTGTATGTGTC 111071
|||| ||||| ||||||||| ||
Sbjct 462579 ACTTGCTTGACATGAGGTTGTATGTCTC 462552
>seq85
Length=62913
Score = 163 bits (180), Expect = 3e-35
Identities = 321/464 (69%), Gaps = 22/464 (5%)
Strand=Plus/Plus
Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562
|||||||| || || || || | ||||| | || || ||||| | ||||| ||| |
Sbjct 1253 CGATCGAATCGTCCAGGTCGCATCAGAGCCTTGTCCAGCATATCCGCTCGGTTAGTACCA 1312
Query 11563 GCAATGACTACAATGCCAGT-CTC-ATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620
|||| ||| || | || || ||| | ||| ||| || |||||||| || |||| |||||
Sbjct 1313 GCAAGGACGACCA--CCTGTTCTCGAGTGTTGAAGCCATCCATTTCCGTAAGAATCTGGT 1370
Query 11621 TGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTTAC--- 11677
| | |||| |||||| || ||||| | | ||| | ||||| | ||| | |
Sbjct 1371 TCAGCGTCGCTTCACGTTCGTCGTTACCGCCAAAACC-CTTGCCGCTCTCTTGTCGCGCG 1429
Query 11678 CGACA----GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733
|||| || |||||||| ||||| || | ||| || || ||| ||| |||
Sbjct 1430 CGACCAATGGCATCAATCTCGTCGATAAAGATGATGCAAGGGGCGTTCTTACGGCCCTCG 1489
Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG-- 11791
|||| || || ||||||||| | ||||||||| || |||||||||||||| | |
Sbjct 1490 GCGAACAGATCTCGTACACGCGAAGGTCCAACACCGACAAACATCTCAACGAATTCGGAA 1549
Query 11792 CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851
| || |||||||| |||||| || ||||||||| || |||| || || | |
Sbjct 1550 CCGC-TCACACTGAA-GAAGGGTACTCCAGACTCACCTGCCGTGGCCTTGGCAAGCAACG 1607
Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC---AC 11908
||||||| ||||| || | ||||| | || || || || ||||||||||||||
Sbjct 1608 TCTTACCAGTACCGGGGGGCCCAGCCAAAATAGCACCTCGTGGGATCTTGGCACCTAGCT 1667
Query 11909 TTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952
|| |||| | |||||||| ||| | |||| ||||| ||||
Sbjct 1668 TTTCAAACT---TCTCAGGCTGCTTCAAGAAGCTCACAAACTCC 1708
>seq291
Length=442874
Score = 82.4 bits (90), Expect = 9e-11
Identities = 119/167 (71%), Gaps = 1/167 (1%)
Strand=Plus/Plus
Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554
|||||| || ||||| || || || ||||| |||||||| ||| |||| || ||
Sbjct 891 GGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAAATGAGCTCGTTAGAAAAGCTCAGACC 950
Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614
||||||||| || | ||||| ||||| ||||||| | ||| || ||||||||
Sbjct 951 AGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGAT 1010
Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG 119661
||||| || || ||||| | ||||||| ||| ||||| |||
Sbjct 1011 ACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGC-GAAGGTAGAG 1056
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588973769253400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |