Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717905.1_202016-08-31] 303 sequences; 36,666,367 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq38 179 4e-40 seq189 134 1e-26 seq187 120 3e-22 seq241 107 2e-18 >seq38 Length=1092239 Score = 179 bits (198), Expect = 4e-40 Identities = 1117/1762 (63%), Gaps = 69/1762 (4%) Strand=Plus/Minus Query 148053 GACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGTCGCTTT 148109 ||||| ||| |||||||| || ||||||||||| ||||| | ||| |||||| Sbjct 464113 GACTGAGACTGATCAATGAAGGCACCACGGTCAGCAGCCATCTGCACAACCTGTCGCTGA 464054 Query 148110 ATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATG 148169 |||||||| | ||||||||||| |||||| | | || ||| | |||| Sbjct 464053 GAA---ATCTCCCACACAGTCTTGTACAGAGCCTTGATCTCGGCAGGGATGTTGGGGATG 463997 Query 148170 CGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTG 148229 ||| | || ||| | |||| || | || ||| | || | | || Sbjct 463996 TTCTGGATAGAACCGTTATCAGCAATGATGCGGTTCTTCATAGCATCGGACCAAAGACCC 463937 Query 148230 AGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACG 148289 | |||| || || | || || | | || || ||||| |||||||| || || || Sbjct 463936 ATGTCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAGGACT 463877 Query 148290 CGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGC 148349 || || | || | |||| || | || ||||| | ||||||||||| | ||||||| Sbjct 463876 CGGCGTTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCATTCGTTGTTGCCAAGAATCTGC 463817 Query 148350 GCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTT 148409 | ||| | || || ||||| || || ||||| |||||| | |||| || | || Sbjct 463816 GAGGTACTGGCGGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGTCTTG 463757 Query 148410 ATTTTGCGCTTCAGAGCCG--CCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGT 148467 | | | || ||| | |||||||||| || || || | || |||||||||| Sbjct 463756 ACAT--CCTCTCGGAGGGGTTCCCAGTCCCAAAGGTCAGAGGGCTTGACATTCCACATGT 463699 Query 148468 CGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCG 148527 || |||| ||||| || || ||| ||||| | | | | ||| || || | | Sbjct 463698 CGAACTGGAGAATACCCTCAGAGGCAGGGGAGCCCTTGAAGGTGGAGTAGGGACCTTCCT 463639 Query 148528 CCGCCGCCAGTT-CGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGC 148586 || || |||| | ||| || || || ||| ||| || |||||| |||||| Sbjct 463638 CCTTGGCGAGTTGCACAG-ACGTAGTAAGGGCAGCGTGGTAGATGGTCTCGAAGATTTGC 463580 Query 148587 CTGTTGAGC---AGCGCCGC-CGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGC 148642 |||| ||| | ||| | || | || | ||||| || || | ||| || Sbjct 463579 TTGTTCAGCTCACGAGCCTCAGGAGAC----TCAAAGGGCATGCGGAGGGCAAGAAAGGC 463524 Query 148643 GTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGC 148702 || || || || || || || | |||||||| ||||| |||||| | || || Sbjct 463523 ATCAGCGAGACCTTGCACACCAAGACCAATGGGTCGGTGACGCATGTTGCTGTTACGAGC 463464 Query 148703 GCTC-TCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCT 148761 ||| | || || ||||||||| |||||||||||||| | |||||| || || || | Sbjct 463463 -CTCTTGGACAGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAACAACTT 463405 Query 148762 TTGTAATTCTGCGCAGCAATTCAAAATCGTACTTGTCATCTAC------GATGCATCGGT 148815 || | | ||||| | || ||||| ||||| | ||| | | Sbjct 463404 GAGTGACCTCGTGCAGCTTCTTGAAGTCGTAGCAAGCATCTTCATAGTTGATAAAAGAGG 463345 Query 148816 TCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGA 148875 || | | ||||| || ||||| || || |||||| ||||||| ||| || | || Sbjct 463344 GCAGAGACAAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGA 463285 Query 148876 TCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGT 148935 |||| | |||||| ||| || | ||| || | ||||||||| || ||||||| | Sbjct 463284 TCTCAGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGAT 463225 Query 148936 TGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT-- 148993 |||| |||||||| |||||| | || || || || ||| | || | || Sbjct 463224 TGCAGTGATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGG 463165 Query 148994 -GAACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCT---CCT---GCT 149046 | ||| | || | ||| || |||| | | | |||||||| ||| || Sbjct 463164 CGTACCAA---AGTTTCTGAGC-----CTTGATAGAC-TTGCGACCCTTACCCTCTCTCT 463114 Query 149047 CGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCA 149104 |||| | ||| | ||| ||| || | || |||||||| || | || || ||||| Sbjct 463113 CGTACTTTTCGTACAGAGC--CTCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCA 463056 Query 149105 CTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATC 149164 | || ||||||||||| | ||| |||||| | || |||||||| || ||||| Sbjct 463055 TTCGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATC 462996 Query 149165 GGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGC--GCCCATG-TT 149221 || | ||| || || | | ||||| || || || | | || | || || || Sbjct 462995 AGGGATCCAAAGAGCTAAGAACAGGTCACGAGC---GCGGACCTCCTCCTTACCGTGATT 462939 Query 149222 GCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAG 149281 || || | || | ||| | ||| |||||||| || |||| ||| | |||| Sbjct 462938 CTTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAA 462879 Query 149282 CGCGCCCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCG 149338 || || |||||| || |||||||| |||| || | ||||||| ||||| || Sbjct 462878 GGCACCAGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACG 462819 Query 149339 AACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGC 149398 | ||| || | || || ||| ||| || || ||| | ||| | ||| || Sbjct 462818 CAGCATGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGC 462759 Query 149399 TCGCACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGC-AG 149456 || | | ||| |||| | ||| || || || ||| | ||| || || || | || Sbjct 462758 ACGGATTCGGTGGGCGTTCAAGCCAATACCACCAGCCAT-CTTGGAAATCATGGCACAAG 462700 Query 149457 TCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGC-AGAAAGCA 149515 || ||| || |||||| || || |||||||| |||||| ||| | || ||||| Sbjct 462699 TC-TTGAGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCAT-ATCAACAAGGAAGCA 462642 Query 149516 CGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGT-AA 149574 || | | || || | || ||||| ||| | |||||||| || || || || Sbjct 462641 TGATGAAAGCTGAGGCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAA 462582 Query 149575 AATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGA 149634 | || || | ||| | | ||| | ||| | || || || || || || || || Sbjct 462581 GAACTTGCTTG-ACATGAGGTTGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAGA 462523 Query 149635 TGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTT 149694 | || | ||||| ||||| | |||||||||||| ||||| || | |||| |||| | Sbjct 462522 TTCCAACAGCGACTCGCATGATCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATCT 462463 Query 149695 TGAGCAAGTA-GCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGG 149753 |||||||| | | | || || | ||||||| || ||||||| |||||||| Sbjct 462462 GTAGCAAGTATGATCTGGACAAG-GTTCGGAAGCCAAAATAGTTGTAGTTGAAGTCGCGA 462404 Query 149754 CCGTGGTCAATGGCGGCGTCGA 149775 | | | |||| || | ||||| Sbjct 462403 TCATAGACAATCGCTGAGTCGA 462382 >seq189 Length=836686 Score = 134 bits (148), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || ||||| |||| || ||| | | | |||||||| Sbjct 312359 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCGAG 312417 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || || ||||||||||| || ||||| || |||||||| ||| Sbjct 312418 CTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGAT 312477 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| ||||||| | |||||| || | ||||| || || || Sbjct 312478 CTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCC 312537 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || ||||||||||||||| Sbjct 312538 CGTGAGGGTCTTGACGAAAATCTGCATG 312565 >seq187 Length=1074518 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| | ||| | | | ||||||||||||||||| Sbjct 440152 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCCTCGAGCTGCTTGCC 440210 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | |||||||| || ||||||||||| |||||||| |||||| ||| Sbjct 440211 GGCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 440270 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||||| | ||| || |||| ||||| ||| ||||| || || || Sbjct 440271 CACATTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGT 440330 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 440331 CTTGACGAAGATTTGCAT 440348 Score = 120 bits (132), Expect = 3e-22 Identities = 148/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||||||| | ||| | | | ||||||||||||||||| Sbjct 440380 GTCGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCA-TCCTCGAGCTGCTTGCC 440438 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | |||||||| || ||||||||||| |||||||| ||||| ||| Sbjct 440439 GGCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTT 440498 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | || || | | ||| || |||| ||| | || |||||||||| || Sbjct 440499 GACGTTGTCGATAGTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGT 440558 Query 133643 TTTTACGAAAATCTGCATGG 133662 || ||||| |||||||||| Sbjct 440559 CTTGACGAAGATCTGCATGG 440578 Score = 109 bits (120), Expect = 5e-19 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| || || ||||| || ||||| ||| | || ||| ||||||||||||||||| Sbjct 439869 GGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACC-GTCCTCGAGCTGCTTGC 439927 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | |||||||| || |||||||| || |||||||| |||||| || Sbjct 439928 CGGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACT 439987 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | ||| || || | ||||| ||| |||||||||| | Sbjct 439988 TGACGTTGTCGATAGTGTCGGATGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAAGG 440047 Query 133642 TTTTTACGA 133650 | || |||| Sbjct 440048 TCTTGACGA 440056 >seq241 Length=404015 Score = 107 bits (118), Expect = 2e-18 Identities = 119/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| ||| | || | |||||||| || || |||||||| |||||| Sbjct 300705 TCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTG 300646 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | ||||| | | ||| || |||| ||||| | Sbjct 300645 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATG 300586 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGC 133663 || ||||| ||||| || || |||||| ||| ||||| Sbjct 300585 GTCTTGCCCGTCAGGGTCTTCACGAAA--CTGGATGGC 300550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418969043720