Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717905.1_202016-08-31]
303 sequences; 36,666,367 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq291 178 2e-38
>seq291
Length=442874
Score = 178 bits (196), Expect = 2e-38
Identities = 386/560 (69%), Gaps = 26/560 (5%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| || ||||| ||||||||||| ||||| || |||||| |||| |
Sbjct 1446 GATCTGGCAAATGTAC-AAGAAGGCAGAGGCCTCCTTCTGGACAGCTGAGGAGATCGATC 1388
Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTCGCTGAGCGAC----GACGAGCGCCATTT 1455886
|| | || |||| ||||| | || ||| ||||||| | ||
Sbjct 1387 TCTCCAAGGATCTCCACG----ACTGGAACAACC-GATTGACTTCAGACGAGCAATACTT 1333
Query 1455887 CATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGG 1455946
|||| ||| | || || ||| ||||| ||| ||| |||||||| ||||| || |
Sbjct 1332 CATCTCCCACATTCTTGC-TTTCTTCGCTGCCTCCGACGGCATCGTCAATGAGAATCTTG 1274
Query 1455947 CCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGA 1456006
| || || | |||||||| | || ||||| || | || || || |||||||
Sbjct 1273 TTGAGCGATTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTATGGTTTCCAGA 1214
Query 1456007 TCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGG 1456066
|| || || ||||||||||| ||||| ||||| ||||| ||||| |||||| ||||||
Sbjct 1213 TCATGATGGAGAACATCCACTCCGAAACATACTCCCTCCTCATCGATACCTACATCAAGG 1154
Query 1456067 ACCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAA 1456125
|||| | | || | || ||||||| |||| | ||||| | || | | | ||
Sbjct 1153 ACCCTGCCCAG-CGTACATACCTCTTCAACGCCGTTGACACTATTCCTTGCATCCGAAAG 1095
Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGC 1456185
||||| || ||||| || |||||| | | | | ||| || ||| || |||| |
Sbjct 1094 AAGGCGGATTGGGCCATCCGATGGATCCAGGA-TAAGAACTCTAC-CTTCGCTCAGCGTC 1037
Query 1456186 TCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTC-TCGG-GCAGTTTCTGCGCCATCTT 1456242
| || | ||||| | ||| ||||| ||||| ||| ||| || || || |||||||
Sbjct 1036 TTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCT--TCCATCTT 979
Query 1456243 TTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTC 1456302
|||||||||||||| ||||||||||| |||| | ||||| ||||| | || ||
Sbjct 978 CTGGCTCAAGAAGCGTGGCCTCATGCCTGGTC-TGAGCTTTTCTAACGAGCTCATTTCTC 920
Query 1456303 GCGACGA-AGTTTTCACCCC 1456321
| ||||| || ||||| ||
Sbjct 919 GTGACGAGGGTCTTCACACC 900
Score = 96.9 bits (106), Expect = 5e-14
Identities = 175/251 (70%), Gaps = 4/251 (2%)
Strand=Plus/Minus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
|| ||| ||| ||||| || ||| | |||||| | | ||| | || || ||
Sbjct 836 ATTATCACCGATGCCGTTTCTATTGAGCAGGAGTTTCTTACTGAGGCTCTCCCTTGTGCC 777
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
|| ||||||||||| ||| | |||||| |||||||| ||||| ||||| || || |
Sbjct 776 CTGCTCGGCATGAACTCCAAC-CTCATGAAGCAGTACATCGAATTC-GTCGCTGATCGTC 719
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
| |||| || |||||| || ||||| ||| | | ||||||| ||| | |||
Sbjct 718 TCCTCGTTGCTCTCGGCAACG-AGAAGGTGTACAAGTCCACCAACCCTTTCGACTTCATG 660
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-GAGTACGCC 1456761
||| ||||| || | |||||||||||||| |||||| ||||| || || |||
Sbjct 659 GAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTTGCTGACTACCAG 600
Query 1456762 AAGGCCGGCGT 1456772
|||||||| ||
Sbjct 599 AAGGCCGGTGT 589
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177781975093086
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |