Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717905.1_202016-08-31] 303 sequences; 36,666,367 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq291 178 2e-38 >seq291 Length=442874 Score = 178 bits (196), Expect = 2e-38 Identities = 386/560 (69%), Gaps = 26/560 (5%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||||||||| ||||| || |||||| |||| | Sbjct 1446 GATCTGGCAAATGTAC-AAGAAGGCAGAGGCCTCCTTCTGGACAGCTGAGGAGATCGATC 1388 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTCGCTGAGCGAC----GACGAGCGCCATTT 1455886 || | || |||| ||||| | || ||| ||||||| | || Sbjct 1387 TCTCCAAGGATCTCCACG----ACTGGAACAACC-GATTGACTTCAGACGAGCAATACTT 1333 Query 1455887 CATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGG 1455946 |||| ||| | || || ||| ||||| ||| ||| |||||||| ||||| || | Sbjct 1332 CATCTCCCACATTCTTGC-TTTCTTCGCTGCCTCCGACGGCATCGTCAATGAGAATCTTG 1274 Query 1455947 CCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGA 1456006 | || || | |||||||| | || ||||| || | || || || ||||||| Sbjct 1273 TTGAGCGATTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTATGGTTTCCAGA 1214 Query 1456007 TCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGG 1456066 || || || ||||||||||| ||||| ||||| ||||| ||||| |||||| |||||| Sbjct 1213 TCATGATGGAGAACATCCACTCCGAAACATACTCCCTCCTCATCGATACCTACATCAAGG 1154 Query 1456067 ACCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAA 1456125 |||| | | || | || ||||||| |||| | ||||| | || | | | || Sbjct 1153 ACCCTGCCCAG-CGTACATACCTCTTCAACGCCGTTGACACTATTCCTTGCATCCGAAAG 1095 Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGC 1456185 ||||| || ||||| || |||||| | | | | ||| || ||| || |||| | Sbjct 1094 AAGGCGGATTGGGCCATCCGATGGATCCAGGA-TAAGAACTCTAC-CTTCGCTCAGCGTC 1037 Query 1456186 TCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTC-TCGG-GCAGTTTCTGCGCCATCTT 1456242 | || | ||||| | ||| ||||| ||||| ||| ||| || || || ||||||| Sbjct 1036 TTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCT--TCCATCTT 979 Query 1456243 TTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTC 1456302 |||||||||||||| ||||||||||| |||| | ||||| ||||| | || || Sbjct 978 CTGGCTCAAGAAGCGTGGCCTCATGCCTGGTC-TGAGCTTTTCTAACGAGCTCATTTCTC 920 Query 1456303 GCGACGA-AGTTTTCACCCC 1456321 | ||||| || ||||| || Sbjct 919 GTGACGAGGGTCTTCACACC 900 Score = 96.9 bits (106), Expect = 5e-14 Identities = 175/251 (70%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 || ||| ||| ||||| || ||| | |||||| | | ||| | || || || Sbjct 836 ATTATCACCGATGCCGTTTCTATTGAGCAGGAGTTTCTTACTGAGGCTCTCCCTTGTGCC 777 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || ||||||||||| ||| | |||||| |||||||| ||||| ||||| || || | Sbjct 776 CTGCTCGGCATGAACTCCAAC-CTCATGAAGCAGTACATCGAATTC-GTCGCTGATCGTC 719 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | |||| || |||||| || ||||| ||| | | ||||||| ||| | ||| Sbjct 718 TCCTCGTTGCTCTCGGCAACG-AGAAGGTGTACAAGTCCACCAACCCTTTCGACTTCATG 660 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-GAGTACGCC 1456761 ||| ||||| || | |||||||||||||| |||||| ||||| || || ||| Sbjct 659 GAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTTGCTGACTACCAG 600 Query 1456762 AAGGCCGGCGT 1456772 |||||||| || Sbjct 599 AAGGCCGGTGT 589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177781975093086