Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717905.1_202016-08-31]
303 sequences; 36,666,367 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq268 138 3e-27
seq187 131 5e-25
seq189 105 2e-17
>seq268
Length=1066066
Score = 138 bits (152), Expect = 3e-27
Identities = 241/351 (69%), Gaps = 0/351 (0%)
Strand=Plus/Minus
Query 349576 TGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTT 349635
|||||| | || | ||||| || || | | || ||| | || || || ||||| ||
Sbjct 603986 TGCTGAGTCTTACCTCGGTGAGACTGTCAACAACGCCGTTGTCACCGTCCCTGCCTACTT 603927
Query 349636 TAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCT 349695
|| || | |||||| || || || ||||| || ||| || || | || |||||
Sbjct 603926 CAACGACTCTCAGCGTCAGGCTACCAAGGATGCCGGTCTCATCGCCGGTCTCAACGTTCT 603867
Query 349696 AAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGA 349755
|||| || || || || || ||||| || ||||| || || ||||| || | | |||
Sbjct 603866 CCGAATCATCAACGAGCCTACCGCTGCCGCCATTGCCTACGGTCTTGACAAGAAGGTTGA 603807
Query 349756 CCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACT 349815
|| || | || || || ||| | ||||||||||| || ||||| || || ||
Sbjct 603806 GGGTGAGCGCAACGTCCTCATCTTCGATCTTGGTGGTGGTACCTTCGATGTCTCTCTCCT 603747
Query 349816 AACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGG 349875
|| |||| ||||| || || || || || | ||||| ||||| || || | |||||
Sbjct 603746 TACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCCGGTGACACTCACTTGGGTGG 603687
Query 349876 AGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCG 349926
|||||||| || || ||||||||| || || ||||| || || |||||
Sbjct 603686 TGAAGATTTCGACAACCGTCTCGTTAACCACTTCGTTAACGAGTTCAAGCG 603636
Score = 114 bits (126), Expect = 4e-20
Identities = 179/255 (70%), Gaps = 6/255 (2%)
Strand=Plus/Minus
Query 378222 TCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACG 378281
|||||| ||| |||||||||| | ||| || || ||||||||||| | ||| | ||
Sbjct 877801 TCGTCGCTGAATGTAACCAGTTTCAGCAGTCTTGACCGCAGTATCAATGAGACCTTCTCG 877742
Query 378282 ACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTC 378341
|||| |||| || |||||||| || || |||| ||||| |||| | | || ||||
Sbjct 877741 ACCAGCCATGGCGTGGAAGAAAAACTCGCTAGGGGTAAGACCACGTAGGTAAGAGTTCTC 877682
Query 378342 AATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATT 378401
| || || | || | || |||| ||||| || || ||||||| | |||||||
Sbjct 877681 GACGAAACCACGGGCTTCGGGAGAATAATCATCCTTGGTGAAATGAGGCAGAGTACGATA 877622
Query 378402 CTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTGTTGAC---CAAGTGCAGAAAC 378458
|| || ||| | ||||| || ||||| || || | ||||||| |||| ||||
Sbjct 877621 CTTGAAACCAAAGGGAATGCGCTTTCCTTCGACGATTTGTTGACCGACAAGCGCAG---T 877565
Query 378459 CATTTGAGCAATATT 378473
|||||| | ||| ||
Sbjct 877564 CATTTGCGAAATGTT 877550
Score = 91.5 bits (100), Expect = 4e-13
Identities = 110/149 (74%), Gaps = 3/149 (2%)
Strand=Plus/Minus
Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505
||||||| | || |||||||| | || || ||| || || | |||||||| ||
Sbjct 878595 ATTTCTTTGAGACGAGGCACACCCAGGGTGACGTTC---TTGGAAGACACACCAGCGAAA 878539
Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565
||||| || || || || | ||||| | ||||||||||| ||||| || || | |||
Sbjct 878538 TGGAAGGTGTTCAGTGTCATCTGAGTGGCAGGCTCACCAATGGACTGGGCAGCCAAAACA 878479
Query 377566 CCAACCATTTCTCCAGGATTGACAATAGC 377594
||||||||||| ||||| ||||| | |||
Sbjct 878478 CCAACCATTTCACCAGGGTTGACGAAAGC 878450
>seq187
Length=1074518
Score = 131 bits (144), Expect = 5e-25
Identities = 170/235 (72%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||| ||||| | | || || || || ||||| ||||| || || || || |
Sbjct 440342 TTTGCATACCGCCACGAAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGT 440401
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
|||| || | || || ||||| || || || || || || || || | || |||||||
Sbjct 440402 AATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGAT 440461
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
||||||| || || || || |||||||| || | || || || || || | ||||||||
Sbjct 440462 CAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTATCAGATG 440521
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || || |||| ||||| ||||| | || || || || ||||||||
Sbjct 440522 ACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 440576
Score = 109 bits (120), Expect = 2e-18
Identities = 165/235 (70%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | || || || || ||||| ||||| || || || || |
Sbjct 440114 TTTGCATACCACCACGAAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGT 440173
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || ||||| || || || || || || || || | || |||||||
Sbjct 440174 AGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGAT 440233
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
||||||| || || || || ||||| || || | || ||||| || || | || ||||
Sbjct 440234 CAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGATG 440293
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || || | ||||| || || || || || || || || |||||
Sbjct 440294 ACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 440348
Score = 87.8 bits (96), Expect = 5e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570
|||||||| | | || || || ||||| || || || || || || || || || ||
Sbjct 439840 CCACCACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 439899
Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630
| ||||| || || || || || || || || || || | || ||||||||||||||
Sbjct 439900 AGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGG 439959
Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690
|| || || || ||||| || || | || || || || || | || |||| || ||
Sbjct 439960 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCGACC 440019
Query 140691 TCAAGTGTAACTGTCTTTCCGGT 140713
||||| || | ||||| |||||
Sbjct 440020 TCAAGGGTGATGGTCTTGCCGGT 440042
>seq189
Length=836686
Score = 105 bits (116), Expect = 2e-17
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | ||||| || ||||| || || || || || ||
Sbjct 312334 CATACCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 312393
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| || || ||||| || || || || ||||||||||| || || ||||| || ||
Sbjct 312394 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGG 312453
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || || || ||||| | || || | ||
Sbjct 312454 GGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTC 312513
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || | ||||| || || || || || || |||||||||||
Sbjct 312514 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 312564
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515248517498309
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |