Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717905.1_202016-08-31] 303 sequences; 36,666,367 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq38 223 4e-53 seq224 147 2e-30 >seq38 Length=1092239 Score = 223 bits (246), Expect = 4e-53 Identities = 418/608 (69%), Gaps = 10/608 (2%) Strand=Plus/Plus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 || ||| || | ||||||| ||||| | || ||| |||||||| ||||||| Sbjct 462489 CCGCAGCATATGATCATGCGAGTCGCTGTTGGAATCTGGGGTGACGATATTGAGCGTGTC 462548 Query 53240 CGTGAGACGTACGACTTAATGAGCCAA--AAGTACTTTACGCACGCCACGCCAACCCTGT 53297 ||||| ||| || | ||| ||| |||| ||| || || || | || || | | Sbjct 462549 TTGGAGACATACAACCTCATGT--CAAGCAAGTTCTTCACTCATGCAAGCCCCACTTTAT 462606 Query 53298 TCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATG 53357 ||||||| ||||| || |||||| | || |||||||| || | |||||||| | Sbjct 462607 TCAACGCCGGTACTCCACAGCCTCAGCTTTCATCATGCTTCCTTGTTGATATGAAGGAGG 462666 Query 53358 ACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGG 53417 || || || || |||||||| || |||||| |||||| || |||||| | | | Sbjct 462667 ACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTG 462726 Query 53418 GTGGTATCGGTATCCACTGCT--CGAACGTCCGTGCGAACGGCACACCAATCAAGGGGAC 53475 ||||||| || | || | |||| ||||||| | ||| | ||| || || Sbjct 462727 GTGGTATTGGCTTGAACGCCCACCGAA--TCCGTGCCACTGGCTCTTACATCGCCGGTAC 462784 Query 53476 GAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535 || || || | || ||||| || ||||| || || ||||||||||| || || || Sbjct 462785 CAATGGTACTTCCAACGGTATCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTA 462844 Query 53536 CGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595 ||| ||||||||||| ||||| || | |||||||||||||| || || ||||| Sbjct 462845 CGTTGACCAGGGTGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAACCATGGCA 462904 Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655 ||||||| | | ||||| || || || || |||||| ||| | || ||| | ||| Sbjct 462905 CGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAGGAGGAGGTCCGCGC 462964 Query 53656 CCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715 ||||||||||| |||||| ||||| || || || |||||| | || |||| | Sbjct 462965 TCGTGACCTGTTCTTAGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGAGAAA 463024 Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTG 53774 || || ||| || |||||||| ||||| ||||| |||| | | | || |||||||| Sbjct 463025 CGGCGAATGGACTCTCATGTGCCCTAACGAATGCCCTGGCCTTGCTGACTG-CTACGGTG 463083 Query 53775 AGGAGTTT 53782 | || ||| Sbjct 463084 ACGAATTT 463091 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAG-AAGAGTCTGATTGACATGAGT 55786 |||||| | ||| ||| |||||||||||| | ||| | || || | | ||| | Sbjct 464020 TCAAGGCTCTGTACAAGACTGTGTGGGAGATTTCTCAGCGACAGGTTG-TGCAGATGGCT 464078 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 ||||| |||||||| | ||| || ||||| |||||||| ||||| |||| || | ||| Sbjct 464079 GCTGACCGTGGTGCCTTCATTGATCAGTCTCAGTCTCTCAACATTCACATGAAGGACCCT 464138 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 | ||| |||| | | | |||||||| || |||||| || |||||||| || Sbjct 464139 ACCATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTCAAGACTGGC 464198 Query 55907 ATGTACTATCTGCGGAC 55923 |||||||| || || || Sbjct 464199 ATGTACTACCTCCGTAC 464215 >seq224 Length=418561 Score = 147 bits (162), Expect = 2e-30 Identities = 191/264 (72%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 117298 TAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACC 117357 ||| || |||||| ||||||||| || |||||||| ||||| ||||| || | ||| Sbjct 185438 TAGTCGGGTGAAAGTGTAACGAGGACTGGCAGCATCAGAACCACCTGCAAGTCGAGAACC 185379 Query 117358 GAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAA 117417 ||| | |||||| || |||| | ||| | |||||| | |||||| ||||| ||||| | Sbjct 185378 GAAGTTTCCACTGGGTTCCAGGCAGTTGATGTTGTTCGAGCCCACGAAGTTCTGAGCAAG 185319 Query 117418 GTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCAC 117477 | | ||| || ||| || | ||||| ||||| || |||||||| || | ||| Sbjct 185318 GCCAATAATGGTCTGTTGAAGTGACTGTTCACCGTGGTGGTATGCCGTCTGTTCGGACAC 185259 Query 117478 GTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATA 117537 || || |||| | | | |||||| ||||| ||| ||| |||||| ||| || || Sbjct 185258 ATAACCTGCCAATTCAACGACCTTCTTGTCTTTGATCAAGTTTCTCTTGAAGCACGCGTA 185199 Query 117538 AATCACCTTGCGCTGACTTGGCTT 117561 || ||||||||||||| ||||| Sbjct 185198 GATGACCTTGCGCTGACCGGGCTT 185175 Score = 120 bits (132), Expect = 3e-22 Identities = 206/299 (69%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || ||||| |||| || | ||||| ||||| |||||||| || || | || || Sbjct 185434 CGGGTGAAAGTGTAACGAGGACTGGCAGCATCAGAACCACCTGCAAGTCGAGAACCGAAG 185375 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | |||| ||| || ||| ||||| |||||| | ||||||||| |||||||| | Sbjct 185374 TTTCCACTGGGTTCCAGGCAGTTGATGTTGTTCGAGCCCACGAAGTTCTGAGCAAGGCCA 185315 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 | ||| || || || | |||||||||||| || |||||||| || | | || Sbjct 185314 ATAATGGTCTGTTGAAGTGACTGTTCACCGTGGTGGTATGCCGTCTGTTCGGACACATAA 185255 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 || ||||| | | |||||| |||| | ||| ||| |||||| || ||||| || Sbjct 185254 CCTGCCAATTCAACGACCTTCTTGTCTTTGATCAAGTTTCTCTTGAAGCACGCGTAGATG 185195 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||||||||||| || || || ||||||| || ||||| || ||| || |||| Sbjct 185194 ACCTTGCGCTGACCGGGCTTGAATCCGTCCAGAACAGATGGAATAGATCGCATGTTGTC 185136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213927419400