Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717905.1_202016-08-31] 303 sequences; 36,666,367 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq38 172 8e-38 seq291 123 4e-23 >seq38 Length=1092239 Score = 172 bits (190), Expect = 8e-38 Identities = 602/926 (65%), Gaps = 18/926 (2%) Strand=Plus/Minus Query 76280 GATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCAT 76339 || || || || ||||| || ||||||| || | |||| || ||||| ||||| Sbjct 463333 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGCAC 463274 Query 76340 AGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACA-TGAGTC 76398 || || | ||| || ||||| || | |||||| ||||| || || ||| || Sbjct 463273 AGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAGTGA-TC 463215 Query 76399 CTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGAC 76458 ||| || || | || || |||| || || |||| | || | ||| | | ||| | Sbjct 463214 CTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAA- 463156 Query 76459 GACTCT-AGCTTTTATTATAGATTTGTATCGCTT---CTCTCTTTCATATTGT--GTATA 76512 | ||| ||| || || ||| ||| | ||| |||||| || || | | ||| | Sbjct 463155 GTTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACA 463099 Query 76513 TAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACAT 76572 | || |||||||| || || | ||| | | ||||| ||||| || || ||||| Sbjct 463098 GAGCC--TCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACAT 463041 Query 76573 CAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGC 76632 | | ||| || || | | || || || ||||| || |||||||| ||||| ||||| Sbjct 463040 GAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGC 462981 Query 76633 AATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAA 76692 | || || || || | | || || || || ||||||| ||||| ||||| Sbjct 462980 TAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCAAGGAA 462921 Query 76693 CTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATT 76752 ||| | | || | ||||||||||| || || || || | |||| ||||| || || Sbjct 462920 CTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTT 462861 Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| ||||| || | || | |||||||| || | || | || ||| |||| || || Sbjct 462860 ACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACC 462801 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 ||| || |||||||| || || | || ||| ||| ||||| || | | | Sbjct 462800 GTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT-TCGGTGGGCGT 462742 Query 76873 T-AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGA 76931 | | ||| || || || ||||| || || || | ||||| || | || || |||| Sbjct 462741 TCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGA 462682 Query 76932 TGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAA 76991 | || || || || || ||| |||| | || ||| || || || | ||| | || Sbjct 462681 TACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTG 462622 Query 76992 CAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGAT 77051 ||| || || || || || || || |||||||||||| | || || | || | Sbjct 462621 GAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGT 462562 Query 77052 TGTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATC 77110 ||||||| || | || || ||||| || | ||||| |||||||| ||||| Sbjct 462561 TGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAG-ATTCCAACAGCGACTCGCATG 462503 Query 77111 AACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCC 77170 | ||||||||| || || || || | || | || | | |||||||||| | | Sbjct 462502 ATCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATCTGTAGCAAGTATGATCTGGAC 462443 Query 77171 AAAGTTTTAAAACCAAAATAGTTGTA 77196 || ||| || |||||||||||||| Sbjct 462442 AAGGTTCGGAAGCCAAAATAGTTGTA 462417 >seq291 Length=442874 Score = 123 bits (136), Expect = 4e-23 Identities = 365/559 (65%), Gaps = 8/559 (1%) Strand=Plus/Plus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| ||||| || ||||| || || || | | ||| | ||||||||||| | || Sbjct 888 ACAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAAATGAGCTCGTTAGAAAAGCTCAG 947 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 |||||||| || |||||||| |||||||| || || | || || | || ||||| Sbjct 948 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 1007 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT---G 46805 || || || || || || || || ||||| | || || | | | | |||| | Sbjct 1008 GATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCCTG 1067 Query 46806 AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATT 46865 ||||| | |||||||| ||||| || | ||||| || || || | || || Sbjct 1068 GATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTT 1127 Query 46866 AAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACAT 46925 ||||| | | | || || || | || ||||| || | || || | Sbjct 1128 GAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGT 1187 Query 46926 TTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 46985 ||| || || ||||| || || ||||| || || || || |||| || || | || Sbjct 1188 TTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGAT 1247 Query 46986 CTGTACCTCTGTACAAAATCGTTCAGACAA-ATTCTCATTCACTATTCCATCACTAGCAG 47044 ||| ||||| | ||||| ||| |||| ||||||||| || || || || |||| Sbjct 1248 CTGGACCTCGCCGCTGAATCGCTCA-ACAAGATTCTCATTGACGATGCCGTCGGAGGCAG 1306 Query 47045 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGT---TTATTCC 47101 | || || || | | || || || |||| || || | ||||| | || |||| Sbjct 1307 CGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTTCC 1366 Query 47102 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTT 47161 |||| | || ||| || || | ||| | || |||||||||||||| || |||||||| | Sbjct 1367 AGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCT 1426 Query 47162 TTTTATACATATTCCATAT 47180 | || ||||| | ||| || Sbjct 1427 TCTTGTACATTTGCCAGAT 1445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931699760960