Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717905.1_202016-08-31]
303 sequences; 36,666,367 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq189 114 3e-20
seq187 105 2e-17
seq241 98.7 2e-15
>seq189
Length=836686
Score = 114 bits (126), Expect = 3e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| | ||||| || ||||| || ||||||||||| ||| | || | |||||
Sbjct 312352 GAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATC 312411
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || || || |||||||| | ||||||||||| | ||| || ||||| ||
Sbjct 312412 CTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTC 312471
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || ||||| | || | | |||| ||| ||| || ||||| || || ||
Sbjct 312472 CTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGT 312531
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| |||||||| ||||| ||||| | ||||||
Sbjct 312532 CTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 312564
>seq187
Length=1074518
Score = 105 bits (116), Expect = 2e-17
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| || || ||||| ||||| || |||||||||||||||| | || | |||||
Sbjct 440364 GAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATC 440423
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || |||||||| || | | |||||| || | | ||| || ||||| ||
Sbjct 440424 CTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTC 440483
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
||||| || ||||| | || | | || || ||| || || || ||||||||
Sbjct 440484 CTGAATCTTGGACTTGACGTTGTCGATAGTATCAGATGACTCAACCTCGAGGGTAATAGT 440543
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || | ||||| ||||||| ||||||
Sbjct 440544 CTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 440576
Score = 100 bits (110), Expect = 7e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| || || ||||| ||||| || ||||||||||| |||| | || | |||||
Sbjct 440136 GAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 440195
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || |||||||| || | | |||||| || | | ||| || ||||| ||
Sbjct 440196 CTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTC 440255
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || || ||| | || | | |||| || ||| || || || || || ||
Sbjct 440256 CTGGATCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGT 440315
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| ||||| ||||| ||||||| |||||
Sbjct 440316 CTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 440348
>seq241
Length=404015
Score = 98.7 bits (108), Expect = 2e-15
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976
|| ||||||||||| |||| | |||| ||||| || || || |||||||||||
Sbjct 300738 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 300679
Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036
| | |||||| |||| | ||| || ||||| || || || || |||||| | ||
Sbjct 300678 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 300619
Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095
| | |||| ||| ||| || || || || || || |||||||| || |||||||||||
Sbjct 300618 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 300560
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153816320651313
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |