Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717905.1_202016-08-31] 303 sequences; 36,666,367 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq189 136 4e-27 seq187 127 2e-24 seq241 123 2e-23 >seq189 Length=836686 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||| || || ||| ||||||||| ||||| |||||| Sbjct 312338 CCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 312397 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||||||||| || || || || || ||||| ||||||| ||| Sbjct 312398 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 312457 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||| ||| | | | |||||| |||||||| Sbjct 312458 ATACCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCAATGGTGTCGGAAGACTCCAC 312516 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || ||||| || ||||| || ||||| ||||||||||||||| Sbjct 312517 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATG 312565 >seq187 Length=1074518 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | || || || || || ||||||||| ||||| || |||||| Sbjct 440350 CCGCCACGAAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGAG 440409 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||||||||| |||| ||||| || || | || Sbjct 440410 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGG 440469 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | || | | ||| | | | ||| || ||||| || Sbjct 440470 ATGCCCTCCTTGTCC-TGAATCTTGGACTTGACGTTGTCGATAGTATCAGATGACTCAAC 440528 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || || |||| ||||| ||||| ||||||||| Sbjct 440529 CTCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATG 440577 Score = 125 bits (138), Expect = 7e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| ||||||||||||||||| | || |||||||||||||||||||| Sbjct 440157 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 440216 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 |||| ||||| || || | || | || |||||||||| ||| || |||| || Sbjct 440217 AATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTC-ACAT 440275 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | |||||| ||||| ||||| | || || || || || || || ||||| | Sbjct 440276 TGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGA 440335 Query 41850 CGAAAATCTGCAT 41862 |||| || ||||| Sbjct 440336 CGAAGATTTGCAT 440348 Score = 120 bits (132), Expect = 3e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || |||||||| ||||| ||||||||| Sbjct 439840 CCACCACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 439899 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| |||||||||||||||||||| |||| ||||| || || | || Sbjct 439900 AGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGG 439959 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||| ||| | | | ||||||| ||||| || Sbjct 439960 ATACCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATAGTGTCGGATGACTCGAC 440018 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 ||| | || || || || || |||| ||||| |||| Sbjct 440019 CTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGA 440056 >seq241 Length=404015 Score = 123 bits (136), Expect = 2e-23 Identities = 139/184 (76%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||||||||||| || | || |||||||||||||||||||| | Sbjct 300740 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 300681 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 ||| ||||| || |||| ||| | || |||||||||| ||| || ||| || | Sbjct 300680 TCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 300621 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | ||||| ||||| ||||| | || || || || |||||||| ||||| || Sbjct 300620 CG--ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 300563 Query 41851 GAAA 41854 |||| Sbjct 300562 GAAA 300559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302249023600