Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717915.1_202016-08-31] 520 sequences; 36,350,275 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq496 104 3e-17 seq170 102 9e-17 >seq496 Length=70014 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| |||||||| | || || || | || || |||||||| || ||||| Sbjct 43831 CTCCTTCTGAATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 43890 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | ||||||||| || | || | || |||||||||| ||| || || | | Sbjct 43891 AATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTCACATT 43950 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || || || |||| |||||||| ||||| || || ||||| || Sbjct 43951 GTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGAC 44010 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 44011 GAAGATTTGCAT 44022 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 43604 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAA 43663 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | ||||||||| || | || | | |||||||||| ||| || |||| ||| Sbjct 43664 ATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGTT 43722 Query 43113 GCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||| || || || |||| |||||||| ||||| || || ||||| || Sbjct 43723 GTCGATAGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGAC 43782 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 43783 GAAGATTTGCAT 43794 >seq170 Length=295105 Score = 102 bits (112), Expect = 9e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| |||||| || || ||||| || ||| || || | || || Sbjct 94072 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 94013 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||||||||| || || |||||||||||||| | || | | |||||||||| | Sbjct 94012 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 93953 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 || || |||| ||| | | | |||||| || ||||| || | ||||| || || Sbjct 93952 ATCTTGGACTTGA-CGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTT 93894 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || ||||| || || || ||||| Sbjct 93893 CCCCGTGAGGGTCTTGACGAAAATCTGCAT 93864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571813883185600