Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717915.1_202016-08-31] 520 sequences; 36,350,275 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq170 84.2 2e-11 seq496 82.4 6e-11 >seq170 Length=295105 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || || ||||| ||| |||||| || |||||||| || || | || || | ||||| Sbjct 94072 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC-GCTCAGGGTGCGGCCATCCTC 94014 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||||| | | || | |||||||| ||| || | || ||||||||| Sbjct 94013 GAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 93954 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||||| | ||||| |||| ||||||| ||| | || || || || Sbjct 93953 GATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTT 93894 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || || || ||||||||||| Sbjct 93893 CCCCGTGAGGGTCTTGACGAAAATCTGCAT 93864 >seq496 Length=70014 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || |||||||| || | | ||| ||||||| |||||||| ||| || || Sbjct 43604 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAA 43663 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAG 48653 || || ||||||||||| || | || ||||||||| || || ||||| | | Sbjct 43664 ATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 43723 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 || || || |||| ||||| ||||| || ||||| || || ||||| || || | Sbjct 43724 TCG--ATAGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGA 43781 Query 48714 CAAAAATCTGCAT 48726 | || || ||||| Sbjct 43782 CGAAGATTTGCAT 43794 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| |||||||||||||| | | || | ||||| |||||||| ||| || | Sbjct 44059 CTCCTTCTGAATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 44118 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 ||| || ||||||||||| || | | ||||||||| ||| || ||||| | Sbjct 44119 AATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTT 44178 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || || ||||| | ||||| ||||| || || || || ||||| | || || Sbjct 44179 GTCG--ATAGTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTG 44236 Query 48713 ACAAAAATCTGCATCGTG 48730 || || |||||||| ||| Sbjct 44237 ACGAAGATCTGCATGGTG 44254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421248530320520