Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717915.1_202016-08-31]
520 sequences; 36,350,275 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq170 84.2 2e-11
seq496 82.4 6e-11
>seq170
Length=295105
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576
|| || ||||| ||| |||||| || |||||||| || || | || || | |||||
Sbjct 94072 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC-GCTCAGGGTGCGGCCATCCTC 94014
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
||||||||||| | | || | |||||||| ||| || | || |||||||||
Sbjct 94013 GAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 93954
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| || ||||| | ||||| |||| ||||||| ||| | || || || ||
Sbjct 93953 GATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTT 93894
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| ||||| || || || |||||||||||
Sbjct 93893 CCCCGTGAGGGTCTTGACGAAAATCTGCAT 93864
>seq496
Length=70014
Score = 82.4 bits (90), Expect = 6e-11
Identities = 135/193 (70%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595
||||| || |||||||| || | | ||| ||||||| |||||||| ||| || ||
Sbjct 43604 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAA 43663
Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAG 48653
|| || ||||||||||| || | || ||||||||| || || ||||| | |
Sbjct 43664 ATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 43723
Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713
|| || || |||| ||||| ||||| || ||||| || || ||||| || || |
Sbjct 43724 TCG--ATAGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGA 43781
Query 48714 CAAAAATCTGCAT 48726
| || || |||||
Sbjct 43782 CGAAGATTTGCAT 43794
Score = 82.4 bits (90), Expect = 6e-11
Identities = 138/198 (70%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| |||||||||||||| | | || | ||||| |||||||| ||| || |
Sbjct 44059 CTCCTTCTGAATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 44118
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652
||| || ||||||||||| || | | ||||||||| ||| || ||||| |
Sbjct 44119 AATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTT 44178
Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712
| || || ||||| | ||||| ||||| || || || || ||||| | || ||
Sbjct 44179 GTCG--ATAGTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTG 44236
Query 48713 ACAAAAATCTGCATCGTG 48730
|| || |||||||| |||
Sbjct 44237 ACGAAGATCTGCATGGTG 44254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421248530320520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |