Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717915.1_202016-08-31]
520 sequences; 36,350,275 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq118 105 1e-17
seq280 95.1 3e-14
>seq118
Length=243722
Score = 105 bits (116), Expect = 1e-17
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 243568 GGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATC 243627
||||||||||| | |||||| ||||||||||||||||| || || || | || |
Sbjct 111644 GGCATGAACTCCAACCTCATGAAGCAGTACATCGAATTCGTCGCTGATCGTCTCCTCGTT 111585
Query 243628 GCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATT 243687
|| || || | ||||| |||||||| |||| ||||| || | ||| |||||| |||
Sbjct 111584 GCTCTCGGCAACGAGAAGGTGTACAAGTCCACCAACCCTTTCGACTTCATGGAGAACATC 111525
Query 243688 TCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725
|| ||| || || || ||||||||||| ||||| ||
Sbjct 111524 TCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGCGT 111487
>seq280
Length=213829
Score = 95.1 bits (104), Expect = 3e-14
Identities = 171/250 (68%), Gaps = 0/250 (0%)
Strand=Plus/Minus
Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164
|||||||| | | ||| | || ||| | ||| | ||||| || ||| | |||| |
Sbjct 149532 AGTCAATGGTGGTCATCTCAGTATCAGCGGAGTCCAAGTCGTGCTCGACGAAGACAGTCT 149473
Query 334165 TCAAAACATCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAG 334224
| | | ||| |||||| || || | ||| |||| || |||||||| || |
Sbjct 149472 TGACCTCGTCCTGCTTGGGGAAACCCTCGACCTGCTCGTTGTTGATGGCGCGCATGAGGG 149413
Query 334225 TTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGA 334284
| || || || | ||||| || ||||| |||||||| || | |||||||| ||| ||
Sbjct 149412 TGGACTTTCCGGAACCGTTGGGACCACAAAGACCGTAACGCTGACCACGCTTGAGACGGA 149353
Query 334285 ACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACA 334344
| || | ||| |||||||| || |||| || || ||||| ||| ||| | || |
Sbjct 149352 GGTGAGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCAAGAGAGAATGTACAGTTGCAAA 149293
Query 334345 GATCCTCACC 334354
||||||||||
Sbjct 149292 GATCCTCACC 149283
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102872652062000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |