Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717915.1_202016-08-31]
520 sequences; 36,350,275 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq496 123 2e-23
seq314 118 1e-21
seq170 118 1e-21
>seq496
Length=70014
Score = 123 bits (136), Expect = 2e-23
Identities = 149/200 (75%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || ||||| ||||||||| | ||||| ||| || ||||| || ||
Sbjct 44054 GTCGACTCCTTCTGAATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 44113
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | ||||||||||||||||| ||||| ||||||||||||||| || || ||||
Sbjct 44114 GCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 44173
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| || || | ||| || |||| ||| | || |||||||||| ||
Sbjct 44174 ACGTTG-TCGATAGTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGT 44232
Query 127096 TTTTACAAAAATCTGCATGG 127115
|| || || ||||||||||
Sbjct 44233 CTTGACGAAGATCTGCATGG 44252
Score = 122 bits (134), Expect = 8e-23
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || ||||| ||||||||| | ||||| ||| || ||||| || ||
Sbjct 43826 GTCGACTCCTTCTGAATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 43885
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | ||||||||||||||||| ||||| ||||||||||||||| ||| || |||
Sbjct 43886 GCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTC 43945
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| |||||| | |||||| |||| ||| | || ||||| || || ||
Sbjct 43946 ACATTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTC 44005
Query 127097 TTTACAAAAATCTGCAT 127113
|| || || || |||||
Sbjct 44006 TTGACGAAGATTTGCAT 44022
Score = 107 bits (118), Expect = 2e-18
Identities = 167/235 (71%), Gaps = 3/235 (1%)
Strand=Plus/Plus
Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939
||||| |||||| || | || | |||| || | || || || || || || |||||
Sbjct 43562 TACTG-TCCACCACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTA 43620
Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999
||| | || ||| || || ||||| || || ||| | |||||||||||||||||
Sbjct 43621 GTCGGAGAGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATC 43680
Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058
||||| || |||||||||||| ||| || ||||| |||| |||| ||||| |
Sbjct 43681 AGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATAGTGTCGGATG 43739
Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||||| |||| ||| | || ||||| || || || || || || || |||||
Sbjct 43740 ACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 43794
>seq314
Length=211226
Score = 118 bits (130), Expect = 1e-21
Identities = 122/159 (77%), Gaps = 2/159 (1%)
Strand=Plus/Minus
Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017
||| || ||||| || || ||| ||||||||||||||||||| || || |||||||||||
Sbjct 97922 ATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGATCCGGGGGGATGCCCTCCTT 97863
Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
|||| ||| || ||||| | |||| |||||||| | |||||| |||| ||| |
Sbjct 97862 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGAT 97803
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 127116
|| ||||| ||||| || || || ||| ||| |||||
Sbjct 97802 GGTCTTGCCCGTCAGGGTCTTCACGAAA--CTGGATGGC 97766
>seq170
Length=295105
Score = 118 bits (130), Expect = 1e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || ||||| || || || ||||| |||| |
Sbjct 94090 CCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 94031
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| || ||||| |||| | ||||||||| || || ||
Sbjct 94030 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 93971
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| ||| || ||||| ||||| | | |||||| | | ||| ||
Sbjct 93970 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT-CAATGGTGTCGGAAGACTCCAC 93912
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | ||| || || || || || || || ||||||||||||
Sbjct 93911 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATG 93863
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475497709244800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |