Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717915.1_202016-08-31]
520 sequences; 36,350,275 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq496 98.7 9e-16
seq170 82.4 7e-11
>seq496
Length=70014
Score = 98.7 bits (108), Expect = 9e-16
Identities = 156/221 (71%), Gaps = 2/221 (1%)
Strand=Plus/Plus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| || || || ||||||||||| ||||| || || ||| || |||| | || ||
Sbjct 43586 ACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCGTCCTCG 43645
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| || || || ||| | |||||||| ||||| || || || || || || || || ||
Sbjct 43646 AGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGG 43705
Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
|| || |||| || | || | |||||||| |||||||| ||||| || | || ||
Sbjct 43706 ATCTTGGACTTGA-CGTTGTCGATAGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTT 43764
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351
||| || || || || || || |||||||| ||| || ||
Sbjct 43765 GCCTGTGAGGGTCTTGACGAAGATTTGCATACCGCCACGAA 43805
>seq170
Length=295105
Score = 82.4 bits (90), Expect = 7e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || || ||||| ||||| || || ||||| | ||| ||| || | ||
Sbjct 94066 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGC 94007
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| || || | || | ||| ||||||||||| || || || || || || || || ||
Sbjct 94006 TTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTG 93947
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
|||| || | || | ||||||||||||||| || || || || | ||| || || ||
Sbjct 93946 GACTTGA-CGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGT 93888
Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340
|| || || || ||||| |||||
Sbjct 93887 GAGGGTCTTGACGAAAATCTGCAT 93864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452000261979200
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |