Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717915.1_202016-08-31]
520 sequences; 36,350,275 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq431 237 2e-57
seq102 98.7 1e-15
seq470 91.5 2e-13
>seq431
Length=164038
Score = 237 bits (262), Expect = 2e-57
Identities = 460/678 (68%), Gaps = 6/678 (1%)
Strand=Plus/Plus
Query 7408 CTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTC 7467
|||||| || ||||| ||||| | | |||||| || ||| | |||||||||||
Sbjct 21214 CTTATGCTTGCGTTTGAACTCATTAACGAAGTGGTTAACGAGACGGTTGTCGAAATCTTC 21273
Query 7468 ACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTT 7527
|||||||||||| || || || || || | ||||| || |||||||| | |||||| |
Sbjct 21274 ACCACCCAAGTGAGTGTCACCGGCAGTAGACTTGACCTCGAAGATACCCTCCTCAATGGT 21333
Query 7528 TAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTC 7587
| | || ||||| || ||||||||||| || || || ||||| ||||| || |
Sbjct 21334 AAGGAGAGAGACATCGAAGGTACCACCACCAAGATCGAAGATGAGGACGTTGCGCTCACC 21393
Query 7588 GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG 7647
|| ||||| || |||||||| || || || || || || || || || || || ||
Sbjct 21394 CTCAACCTTCTTGTCAAGACCGTAGGCAATGGCGGCAGCGGTAGGCTCGTTGATGATTCG 21453
Query 7648 AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTT 7707
||| ||| || || || || ||||||| || || || || || || || |||||
Sbjct 21454 GAGAACGTTGAGACCGGCGATGAGACCCGCATCCTTGGTAGCCTGACGCTGAGAGTCGTT 21513
Query 7708 AAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGC 7767
|||||||| ||||| || || || |||| |||| ||| |||||| || || || ||
Sbjct 21514 GAAGTAGGCAGGGACGGTGACAACGGCGTTGTTGACAGTCTCACCGAGGTAAGACTCAGC 21573
Query 7768 GATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGT 7827
| || ||| ||||| || | ||| | || ||||| || | | || ||| |
Sbjct 21574 AGTCTCACGCATCTTGGTGAGGATCATGGCGGAGATCTCCTCGGGGGTGAAGGTCTTCTT 21633
Query 7828 TTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATA 7887
||||| || || ||||| || || ||| || |||| | ||| | | |
Sbjct 21634 CTCACCCTTGAACTCAACCTCGATGGCGGGCTT---GCCAGCCTTGTCGATGATTGTGAA 21690
Query 7888 CGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACG 7947
| | | ||||||||| | ||||||| || | ||||| | ||||| | ||
Sbjct 21691 GGGGAAGTGCTTCATATCGGCCTGGACCTCAGCATCGGCGAACTTGCGGCCGATCAATCG 21750
Query 7948 CTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCC 8007
||| || || || || ||||| | |||||||||||| |||||||| || || || ||
Sbjct 21751 CTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTTGGCGGCATCACC 21810
Query 8008 GATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTG 8067
|| ||||| || | || || || ||||| | || ||||| ||||| || || ||
Sbjct 21811 AATCAGACGCTC---GGTGTCGGTGAAACCGACGAATGAGGGGGTAGTTCGGTTACCCTG 21867
Query 8068 GTCGTTCGCAATAATTTC 8085
|||||| || || || ||
Sbjct 21868 GTCGTTGGCGATGATATC 21885
Score = 132 bits (146), Expect = 6e-26
Identities = 526/829 (63%), Gaps = 19/829 (2%)
Strand=Plus/Plus
Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628
||||| || || || ||||| || ||||| | || ||| || || || || || ||
Sbjct 19864 TCATCCTCCTCCTTGTACTTCTCAGCATCGTTGAGCATGCGCTCGATCTCCTCCTTGGAC 19923
Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688
| | ||||| || || || || ||||| | ||| || || | |||| || |
Sbjct 19924 AGGCGGCCCTTGTCGTTGGTGATGACGATCTTGTTGGACTTGCCGGTACCCTTCTCGACG 19983
Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748
|| || |||| ||||| || ||||| | |||||| | || | ||| || || |
Sbjct 19984 GCGGAAACGTTCATGATACCGTTGGCATCGAGATCGAAGGTGACCTCAATCTGGGGAACA 20043
Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808
|| | || || | || ||||| || | || || | || | | |||| ||| |
Sbjct 20044 CCACGGGGAGCAGGGGGGATACCAGTGAGCTCGAACTTGCCCATGAGGTTGTTGTCCTTG 20103
Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868
| || || ||||| || ||||| | || || |||| || || ||
Sbjct 20104 GTGCGCTGGCGCTCACCCTCGTAGACCTGGATAAGGACACCAGGCTGGTTGTCGGAGAAG 20163
Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928
|| ||||||| | ||||| | ||||| || || || | || || | | ||||
Sbjct 20164 GTAGAGAAGACCTCGGACTTCTTGGTGGGAATGGTGGTGTTGCGGGGGATGAGCTTGGTC 20223
Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988
|| |||||||| || |||| || ||||| ||||| | ||||| | ||| | |
Sbjct 20224 ATCATACCACCAGCGGTCTCGATACCGAGAGAGAGAGGGGCAACGTCGAGGAGCAGAA-- 20281
Query 6989 TCTTGAACAGATTCGTTCCCTT-----------CACCCGTTAAGATGGCGGCTTGGACCG 7037
||| | || || |||| |||| | | || || || ||||| |
Sbjct 20282 TCTCG------TTGGTGGCCTTGCTAGAGGTGTCACCAGAGAGAATAGCAGCCTGGACAG 20335
Query 7038 TCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAA 7097
|| ||||| || || |||||||| ||||| || | || || | || || ||||| |
Sbjct 20336 CGGCACCGTAGGCAACAGCCTCATCAGGGTTGATGGACTTGTTGGGCTCCTTTCCGTTGA 20395
Query 7098 AATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGA 7157
| || || | | | | || | ||||| || || ||||||||||| | ||||
Sbjct 20396 AGTAGTCGGTGATGAGCTTCTGGACACGGGGGATACGGGTAGATCCACCGACGAGGACGA 20455
Query 7158 TTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA 7217
| || | || || || |||||||| | ||| ||| ||||| || | |
Sbjct 20456 TCTCGTGGACGAGGGACTTGTCGATCTTGGCGTCGGTAAGGACACGGTCGACGGGCTGGA 20515
Query 7218 TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTAT 7277
| ||||| | ||| || || ||||| ||||| |||||||| ||||| || |
Sbjct 20516 TGGTGGATCGGAAGAGATCCTGGCAGAGCTCCTCGAAACGAGCACGGGTGATGGAAGTGT 20575
Query 7278 AGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATA 7337
||||||||| || ||| | | || || || ||||||| || || || | ||||| |
Sbjct 20576 AGAAATCAATACCCTCGAAGAGAGAGTCGATCTCAATGGAGGTCTGAGCGGAAGAAGAGA 20635
Query 7338 ACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACG 7386
|||||||| ||||||||||| || ||||| | ||| ||||| |||||
Sbjct 20636 GAGTTCGCTTGGCGCGCTCACAAGCGGTTCGGAGACGTCGAAGAGCACG 20684
>seq102
Length=117963
Score = 98.7 bits (108), Expect = 1e-15
Identities = 170/244 (70%), Gaps = 5/244 (2%)
Strand=Plus/Plus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
||||||||| |||||||| | ||| || || || ||||| || || || ||||| ||
Sbjct 24203 ATCGAAATCCTCACCACCAAGGTGGGTGTCACCAGCGGTAGCGAGAACCTCGAAGATGCC 24262
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575
| |||||| | || |||||||| || ||||||||||| || || | || |
Sbjct 24263 ATCGTCAATGGAGAGCAGAGAAACATCGAAGGTACCACCACCGAGATCGTA---GACAAT 24319
Query 7576 GTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634
| || | || ||| | | |||||| || |||||||| |||||||| || || || || |
Sbjct 24320 GATC-TGGCGCTCGCCATCGTTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTAGGCT 24378
Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694
| || | ||| || || ||| || || ||||| | | || || || || || ||||
Sbjct 24379 CGTTGACAATTCGGAGGACGTTGAGACCGGCAATGATACCGGCGTCCTTGGTGGCCTGTC 24438
Query 7695 GTTG 7698
| ||
Sbjct 24439 GCTG 24442
>seq470
Length=217628
Score = 91.5 bits (100), Expect = 2e-13
Identities = 226/339 (67%), Gaps = 12/339 (4%)
Strand=Plus/Minus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
|||||||||||||||||| | || ||||| || ||| | ||||| || || | |||
Sbjct 146491 ATCGAAATCTTCACCACCGAGATGGGTATCACCGTTGGTGGACTTGACCTCGAAAACACC 146432
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575
| || | | | || | ||| || ||||||||||| || || | | ||
Sbjct 146431 GTTCTGGATCTCAAGGATGGAGATATCGAAGGTACCACCACCAAGATCGTAGACAGCGAC 146372
Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635
| | || | || ||| ||||||||||| || | ||| || || || || ||
Sbjct 146371 AATGCTGTCAGCCTC------CTTCTCGAGACCGTAGGCAAGAGCGGCGGCAGTAGGCTC 146318
Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCT-TG 7692
|| | | ||| || ||| ||||| ||||| ||| | || || || || ||| ||
Sbjct 146317 GTTGACGACACGGAGGACGTTGAGGCCGGCAAT--TTGACCAGCGTCCTTGGT-GCTCTG 146261
Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752
||| || || ||||| |||||||| ||||| || ||||| |||| | ||| ||||
Sbjct 146260 TCGCTGAGAGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCGTTCTTGATAGGCTTAGA 146201
Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791
||| |||| || ||| | || ||||| ||| | || ||
Sbjct 146200 GAGGTACGCCTCGGCGGTCTCCTTCATCTTGTTGAGGAC 146162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635128671636800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |