Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717915.1_202016-08-31]
520 sequences; 36,350,275 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq393 104 3e-17
seq118 104 3e-17
>seq393
Length=304890
Score = 104 bits (114), Expect = 3e-17
Identities = 528/835 (63%), Gaps = 10/835 (1%)
Strand=Plus/Minus
Query 48003 TCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAA 48062
|||||||| ||||| ||||| |||| || ||| |||| | |||| || | | ||||
Sbjct 8313 TCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAA 8254
Query 48063 ACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTA--TTTAGTATATA 48120
| || |||||| ||| | | | ||| || ||||| ||| ||| | |
Sbjct 8253 AGTTTCTGAGCCTTGATAGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGA 8194
Query 48121 ACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCA 48180
| ||||||||| || || || | | | | ||||| ||||| ||||| ||||| |
Sbjct 8193 GC--CTCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATGA 8136
Query 48181 ATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTA 48240
| ||| || | | | | || | |||| || | ||| || |||||||||||||
Sbjct 8135 GAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCTA 8076
Query 48241 TAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGT 48300
|| | || | || | | || || || || |||| || || ||||| || |
Sbjct 8075 AGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCAAGGAACT 8016
Query 48301 CCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTAC 48360
| | | || || ||||||||||| | || || || | |||| ||||| || ||||
Sbjct 8015 CGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTAC 7956
Query 48361 CTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCAT 48420
| || || || | || | ||||| ||||| | || | | ||| || || ||||| |
Sbjct 7955 CACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACCGT 7896
Query 48421 TTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT--ATTACTAATTGA 48478
| || |||||||||| || | || ||| ||| | || | || | || |
Sbjct 7895 TGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCGTTCA 7836
Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538
| || |||||||| ||||| || || || | ||||| || |||||||| || ||
Sbjct 7835 A--GCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGAT 7778
Query 48539 TCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACA 48598
|| || || || || || |||||| | || || || || | || || ||
Sbjct 7777 ACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTGG 7718
Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658
||| || | || ||||| || || ||||||| | || | || ||| | | ||
Sbjct 7717 AGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGTT 7658
Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717
||||| || | ||| || ||||| || | || || | || || ||||| |
Sbjct 7657 GTATGTCTCCAAGACACGCTCAATATCGTCACCCCAG-ATTCCAACAGCGACTCGCATGA 7599
Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777
||||| || || | ||| |||||||| | || | | | |||||| | ||
Sbjct 7598 TCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATCTGTAGCAAGTATGATCTGGACA 7539
Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGA 48832
| ||| || |||||||||||||| |||||| ||||| | ||| | |||
Sbjct 7538 AGGTTCGGAAGCCAAAATAGTTGTAGTTGAAGTCGCGATCATAGACAATCGCTGA 7484
>seq118
Length=243722
Score = 104 bits (114), Expect = 3e-17
Identities = 358/558 (64%), Gaps = 3/558 (1%)
Strand=Plus/Plus
Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019
||| ||||| || || || ||||| || | | || | || |||||||| | |
Sbjct 111762 ACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCAG 111821
Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079
||||||||| || || | || || | |||||| || |||||||| | || |||||
Sbjct 111822 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 111881
Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139
||||| || || || ||||||||||| || | | | | ||| | |||| ||
Sbjct 111882 GATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCCTG 111941
Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199
|||||| | |||||||| ||||||||| | || || || || || | | ||
Sbjct 111942 GATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTT 112001
Query 19200 AAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACAT 19259
|| || || |||||| | | || || | || | ||| || | | ||| |
Sbjct 112002 GAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGT 112061
Query 19260 TTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319
||| || || || || || || ||||| || || || || |||| || || | ||
Sbjct 112062 TTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGAT 112121
Query 19320 CTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGC 19379
||| || || | | |||| || || | ||| ||||| || || || || || ||
Sbjct 112122 CTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGCAGC 112181
Query 19380 AAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT---GTATTCCA 19436
|| || || | | || || || | || || ||||| || ||| | |||||
Sbjct 112182 GAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTTCCA 112241
Query 19437 ATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTT 19496
|| | | ||| || || | ||| | || ||| ||||||| || || |||||||| ||
Sbjct 112242 GTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCTT 112301
Query 19497 TTTATACATGTTCCATAT 19514
|| ||||| | ||| ||
Sbjct 112302 CTTGTACATTTGCCAGAT 112319
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562105146292800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |