Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717915.1_202016-08-31] 520 sequences; 36,350,275 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq393 324 3e-83 seq118 188 1e-42 >seq393 Length=304890 Score = 324 bits (358), Expect = 3e-83 Identities = 1160/1772 (65%), Gaps = 114/1772 (6%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || |||||||||||| || || || ||||||||||| ||||| Sbjct 9345 ACGGTGAACTGGATAGGGGCAGCAGCAGCCTGTGTACGGAGGTAGTACATGCCAGTCTTG 9286 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATT 212668 || || ||| |||||| | |||||| |||| ||| |||| | | || Sbjct 9285 AGACCGAGCTT---CCAGCCAGCGAAGTGCAT-GCTGGTGA---TCTTGCCCATGGTAG- 9234 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 |||| | || || || | ||| || |||||| ||| || ||||| | | Sbjct 9233 --GGTCCT--TCATG-------TGAATGTTGAGAGACTGAGACTGATCAATGAAGGCACC 9185 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | |||||| ||||| | | | | || ||| || | ||||||||| |||||| | | Sbjct 9184 ACGGTCAGCAGCCATCTGCACAACCTGTCGCTGAGAAATCTCCCACACAGTCTTGTACAG 9125 Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAG 212848 | |||| || | |||| | |||||||||||| | ||| || || ||| ||| Sbjct 9124 AGCCTTGATCTCGGCAGGGATGTTGGGGATGTTCTGGATAGAACC---GT-TAT---CAG 9072 Query 212849 C--TGCAGGCG------CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACC 212900 | || | ||| ||| | ||| ||| || ||| || | || ||||| Sbjct 9071 CAATG-ATGCGGTTCTTCATAGCATCGGACCAAAGACCCATGTCGACAAGATCCTTGAGA 9013 Query 212901 AGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAA 212960 || |||||||| | |||||| || || | || || | | ||||| | ||| || Sbjct 9012 AGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAGGACTCGGCGTTGGTAGATGTTGGAG 8953 Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||| ||||| | || |||||||| || |||||||| | || ||||| || ||||| Sbjct 8952 GTGTAAGGCTCAAAGCATTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCGGTAGGCATA 8893 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTG---CTCGCCGATGAGGCGC-CGAAGCTC 213076 ||||| || || |||||||| | | ||||| || | | | | | || || Sbjct 8892 GGAGCAACGAGCAGACTGTTGCGGATACCGTGAGTCTTGAC----ATCCTCTCGGAGGGG 8837 Query 213077 TGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAA 213136 | |||||||||| | |||| | ||| || ||||||||||| ||||| | Sbjct 8836 TTCCCAGTCCCAAAGGTCAGAGGG---------CTTGACATTCCACATGTCGAACTGGAG 8786 Query 213137 GATGCCTTTGCTCA----CGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGG 213192 || || |||| | ||| ||||| | | | ||||||||| || | |||||||| Sbjct 8785 AATACC----CTCAGAGGCAGGGGAGCCCTTGAAGGTGGAGTAGGGACCTTCCTCCTTGG 8730 Query 213193 CCAGCTCGCAG-GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTG 213251 | || | ||| |||| |||||||||| ||||||||| || || || | | |||| Sbjct 8729 CGAGTT-GCACAGACGTAGTAAGGGCAGCGTGGTAGATGGTCTCGAAGATTTGCTTGTTC 8671 Query 213252 AGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGC 213311 |||| ||||| || ||| |||||||| | | | || ||||||| || Sbjct 8670 AGCTCACGAGCCTCAGGAGACTCAAAGGGCATGCGGAGGGCAAGAAAGGCATCAGCGAGA 8611 Query 213312 CCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAA 213370 || || || || | || ||||||| ||| | || ||| || |||| ||| | | Sbjct 8610 CCTTGCACACCAAGACCAATGGGTCGGTGACGCATGTTGCTGTTACGAGC-CTCTTGGAC 8552 Query 213371 GGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATG 213430 ||||| |||| ||||||||||||||| | |||||| | |||| ||||| | Sbjct 8551 AGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAACAACTTGAGTGACCTC 8492 Query 213431 GGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAG 213484 | ||| | || |||| |||||| | || | | ||| ||||| Sbjct 8491 GTGCAGCTTCT------TGAAGTCGTAGCAAGCATCTTCATAGTTGATAAAAGAGGGCAG 8438 Query 213485 GGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTC 213544 | | | ||| ||||||||||| || ||||| | || | | ||| || |||||||| Sbjct 8437 AGACAAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTC 8378 Query 213545 GGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACT-TTGCGTTGG 213603 |||||||||||| || ||||||||| || ||||||| ||||| ||| ||||| | | Sbjct 8377 AGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTT--ACTCTTGCGATTG 8320 Query 213604 CAG-AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGG 213662 ||| |||||||||||||||| | ||| ||||||||| ||||| | | || || | Sbjct 8319 CAGTGATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCG 8260 Query 213663 CTCCAGAGGTACCTGGCCTTGA-CCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACT 213720 ||| || | | ||||||| || || ||| | | | | | |||||||| Sbjct 8259 TACCAAAGTTTCTGAGCCTTGATAGACTTGC--GACCCTTAC---CCTCTCTCTCGTACT 8205 Query 213721 GTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGG--ATGC 213778 |||||| || | | ||||||| || || | || ||| | || |||| || | Sbjct 8204 TTTCGTACAGAGCCTCAAATTCGTCACCGTAG---CAGT-CAG-CAAGGCCAGGGCATTC 8150 Query 213779 G---GGACACATGAGGCTCCAGTCCCCGTCATCTCT-GACTCTCTGCATGAACAGGTCCG 213834 | || |||||||| |||| || |||| ||||| ||| | || |||||| || || | Sbjct 8149 GTTAGGGCACATGAGAGTCCATTCGCCGT-TTCTCTCGACACGCTTCATGAAAAGATCAG 8091 Query 213835 GGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGC 213894 ||| ||| || || ||||||||| | | | ||| ||| || || || | Sbjct 8090 GGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTC 8031 Query 213895 GCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGC 213954 | ||||| || || || |||| ||| |||||||| || || | ||||||||| ||||| | Sbjct 8030 GGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCAC 7971 Query 213955 CCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGA 214011 | || | |||| || |||||||| || | || ||||||| | ||||| | Sbjct 7970 CAGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCA 7911 Query 214012 CGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCA 214071 ||| || | |||||||| || ||||| || || || || ||||| | ||| | | Sbjct 7910 TGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGA 7851 Query 214072 --GGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCT 214129 | || | | | || || || ||||| || |||||| |||||||| || | | Sbjct 7850 TTCGGTGGGCGTTCA-AG-CCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTT 7793 Query 214130 CACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAA-GAAGCAGCTCG 214188 | || || ||| || | |||||||| || | | ||| ||| |||||| | Sbjct 7792 GAGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCA-TATCAACAAGGAAGCATGATG 7734 Query 214189 AGAGCTGGGGC-CTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAAC 214247 | ||||| ||| |||| | || | |||||| | |||||||| ||||| | | ||| Sbjct 7733 AAAGCTGAGGCTGTGGA-GTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAAC 7675 Query 214248 TTGTTAGAGAGGAGCCTGTAGGTCTCCAGGAC 214279 ||| | || | ||| |||| ||||||| ||| Sbjct 7674 TTGCTTGACATGAGGTTGTATGTCTCCAAGAC 7643 >seq118 Length=243722 Score = 188 bits (208), Expect = 1e-42 Identities = 487/733 (66%), Gaps = 23/733 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | ||||| |||||||| ||||| || | | ||||||||||| Sbjct 111474 CTGGTAGTCAGCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTC 111533 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| ||| ||||||| | || |||||| | || ||| | | || | Sbjct 111534 CATGAAGTCGAAAGGGTTGGTGGACTTGTACACCT-TCTCGTTGCCGAGAGCAACGAGGA 111592 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | |||| |||||| | |||||||| | ||||||| || ||||||||| | |||| Sbjct 111593 GACGATCAGCGACGAATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGGG 111652 Query 48018 -ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| ||| | ||||| || |||||||||| ||| || ||||| || | ||| Sbjct 111653 CACAAGGG-AGAGCCTCAGTAAGAAACTCCTGCTCAATAGAAACGGCATCGGTGATAATG 111711 Query 48077 TGCTTAACGCGGGAC-TCTGAGGGTTTGTTGCGCAGGTGC-TTG------GCATAGAGCA 48128 | || || | |||| |||| || ||| || | ||| | | ||| | Sbjct 111712 TCCT------GGATCATCTG----TTTGCTG-GCACGTCCCTTGAGGTGAGAGTGGAGGA 111760 Query 48129 TGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGA 48188 ||||||||||| |||| | || || || || |||||| |||| || |||| | Sbjct 111761 GACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCA 111820 Query 48189 GACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGA 48248 |||||||||||| || | || ||||||||||| || | || || | || ||||| Sbjct 111821 GACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGA 111880 Query 48249 AGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG 48308 |||| ||||| || || || || || || | || |||| | || |||||| || Sbjct 111881 AGATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCCT 111940 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 |||||| | ||||| || |||||||| |||||| || || || || | ||| Sbjct 111941 GGATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGT 112000 Query 48369 GGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 |||||| | | | || | | |||| | |||||| || || | ||| Sbjct 112001 TGAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATG 112060 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 | || ||||| | ||||| || ||||||||| || |||||| | ||||| | Sbjct 112061 TTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGA 112120 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||| || || | ||||| ||| | |||||||||||||| || || || || |||| Sbjct 112121 TCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGCAG 112180 Query 48549 CAAAGAAGGCAAG 48561 | ||||| ||||| Sbjct 112181 CGAAGAAAGCAAG 112193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931526745036800