Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717915.1_202016-08-31] 520 sequences; 36,350,275 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq393 214 2e-50 seq118 107 2e-18 >seq393 Length=304890 Score = 214 bits (236), Expect = 2e-50 Identities = 1043/1637 (64%), Gaps = 43/1637 (3%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| | ||| ||||||| ||||| | || ||| || || || ||||| ||| Sbjct 7585 CCCGCAGCATATGATCATGCGAGTCGCTGTTGGAATCTGGGGTGACGATATTGAGCGTGT 7644 Query 75271 CTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTC 75328 ||||||||||||| || ||||| |||| | | ||| ||| |||| || || | Sbjct 7645 CTTGGAGACATACAACCTCATGTCAAGCAAGTTCT--TCACTCATGCAAGCCCCACTTTA 7702 Query 75329 TTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 ||||| || ||||| ||| || ||| | || ||||||||| | | | |||||| Sbjct 7703 TTCAACGCCGGTACTCCACAGCCTCAGCTTTCATCATGCTTCCTTGTTGATATGAAGGAG 7762 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 ||| || | |||||||| | || || | | ||||| || || ||| |||| Sbjct 7763 GACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCT 7822 Query 75449 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 75508 || |||||||| || || ||| | | |||| | ||| || || || Sbjct 7823 GGTGGTATTGGCTTGAACGCCCACCGAATCCGTGCCACTGGCTCTTACATCGCCGGTACC 7882 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 |||||| || | ||||| |||| ||||| || || || ||| ||| || || || Sbjct 7883 AATGGTACTTCCAACGGTATCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTAC 7942 Query 75569 GTAAATCAAGCGGGGCGTCGCAAGGG-----GT-CCATCGCGGTCTACTTGGAACCATGG 75622 || | || ||| || |||| | || || |||| ||||| | ||||||||| Sbjct 7943 GTTGACCA---GGGTGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAACCATGG 7999 Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 || ||||| || | ||||||||||| | ||| || || ||| | || |||| || Sbjct 8000 CACGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAGGAGGAGGTCCGC 8059 Query 75683 TGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAG 75742 | | || || || | | | || ||||| || || |||||||||||||| || ||| Sbjct 8060 GCTCGTGACCTGTTCTTAGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGAGA 8119 Query 75743 GGTGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGACGCGGTGGG 75801 || ||||| |||| | || || || || || || || || | ||| || Sbjct 8120 AACGGCGAATGGACTCTCATGTGCCCTAACGAATGC-CCTGGCCTTGCTGACTGCTACGG 8178 Query 75802 TGAGGAGTTTGAAGCCCTCTACACAAAGTATGA-AGAGGAGGGT-AGAGCCAATGCGACT 75859 ||| || ||||| || || ||| |||||| || ||| |||||| || | | || | | Sbjct 8179 TGACGAATTTGAGGCTCTGTACGAAAAGTACGAGAGA-GAGGGTAAGGGTC---GCAAGT 8234 Query 75860 GTA-CCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACAC 75917 || | || | | | | ||||| | || ||||| | | ||||| ||||| |||| | Sbjct 8235 CTATCAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACAGAGACCGGAAACC 8294 Query 75918 CATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAA 75977 | | ||||| ||||||||| || || ||||||||||||||||| | || || | Sbjct 8295 CTTTCATGCTCTACAAGGATCACTGCAATCGCAAGAGTAACCAAAAGAACCTTGGTACCA 8354 Query 75978 TCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTG 76037 || ||||| || || ||||| || || | || ||| | |||||| |||| Sbjct 8355 TCCGAAGCTCCAACCTGTGCACTGAGATCATTGAATACTGCGCCCCTGATGAGGTCGCTG 8414 Query 76038 TTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCA---ATGAAGAGACTCGCACTT 76094 ||||||| | || || | | || || | | ||| ||||||| || || | Sbjct 8415 TTTGCAACCTTGCCTCCTTGTCTCTGCCCTCTTTTATCAACTATGAAGATGCTTGC---T 8471 Query 76095 TTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCA 76154 || | | || || || || |||| | ||||| | ||| | ||| ||| Sbjct 8472 ACGACTTCAAGAAGCTGCACGAGGTCACTCAAGTTGTTGTCCGCAATTTGAACAAGATCA 8531 Query 76155 TTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTA 76214 | ||| || || || || | || || || || ||||| ||| |||| | Sbjct 8532 TCGACGTCAACCACTACCCTGTCCAAGAGGCTCGTAACAGCAACATGCGTCACCGACCCA 8591 Query 76215 TTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATT 76274 ||||| | ||||| ||||||||||| |||| ||| || |||| | ||||| | Sbjct 8592 TTGGTCTTGGTGTGCAAGGTCTCGCTGATGCCTTTCTTGCCCTCCGCATGCCCTTTGAGT 8651 Query 76275 CAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGG 76334 | ||| || ||| |||| | ||||| || ||||| || ||||| |||| Sbjct 8652 CTCCTGAGGCTCGTGAGCTGAACAAGCAAATCTTCGAGACCATCTACCACGCTGCCCTTA 8711 Query 76335 AGGCGAGTTGTG-AATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCC 76393 || |||| || | || | | ||||| |||| || || |||| || || Sbjct 8712 CTACG-TCTGTGCAACTCGCCAAGGAGGAAGGTCCCTACTCCACCTTCAAGGGCTCCCCT 8770 Query 76394 GCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAAC--TACG 76451 || || | || | || ||||| || |||| |||| || || || || | | | | Sbjct 8771 GCCTCTGAGGGTATTCTCCAGTTCGACATGT-GGAATGTCAAGCC-CTCTGACCTTTGGG 8828 Query 76452 ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGG 76511 ||||||| ||| || ||||| | ||| | || |||||||| | | | Sbjct 8829 ACTGGGAACCCCTCCGAGAGGATGTCAAGACTCACGGTATCCGCAACAGTCTGCTCGTTG 8888 Query 76512 CACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCAT 76571 | || ||||| || ||| ||| | || || | || || || ||||||||||| || | Sbjct 8889 CTCCTATGCCTACCGCCAGTACCTCGCAGATTCTTGGCAACAACGAATGCTTTGAGCCTT 8948 Query 76572 ACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGC 76631 |||| | |||||||||| | || ||| || || ||||| |||||||| Sbjct 8949 ACACCTCCAACATCTACCAACGCCGAGTCCTTGCTGGCGAGTTCCAGGTTGTCAACCCCT 9008 Query 76632 ACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCA--- 76688 || |||| || || | || ||||| |||||| | | ||||||| | | || Sbjct 9009 GGCTTCTCAAGGATCTTGTCGACATGGGTCTTTGGTCCGATGCTATGAAGAACCGCATCA 9068 Query 76689 -TGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAAT 76747 || ||| | | ||||| || || || ||| | | ||||| | || |||||| | Sbjct 9069 TTGCTGATAAC----GGTTCTATCCAGAACATCCCCAACATCCCTGCCGAGATCAAGGCT 9124 Query 76748 CTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGT 76807 || ||| || |||||||| || | | | || | | ||||| || || ||| Sbjct 9125 CTGTACAAGACTGTGTGGGAGATTTCTCAGCGACAGGTTGTGCAGATGGCTGCTGACCGT 9184 Query 76808 GGTCGCTTCATTGATCA 76824 ||| |||||||||||| Sbjct 9185 GGTGCCTTCATTGATCA 9201 >seq118 Length=243722 Score = 107 bits (118), Expect = 2e-18 Identities = 305/460 (66%), Gaps = 24/460 (5%) Strand=Plus/Minus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 ||||||| |||| ||| |||| ||||| || ||||||||||||||| ||| | | Sbjct 111925 CCTTCGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCT 111866 Query 65129 TCTGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 | ||| | || | ||| | |||||||| || |||||||| || || |||| || || Sbjct 111865 T-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCTAAC 111807 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACT 65247 || || ||||| || ||||||||||| ||| || |||||| || ||| || | || Sbjct 111806 GAGCTCATTTCTCGTGATGAGGGTCTTCACACCGACTTTGCC-TG--TCTCCTCCACTCT 111750 Query 65248 TTGCGTAATAGAC---CCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAG 65304 | || ||| ||| | | | ||||| | ||| | | || || ||| Sbjct 111749 CACCTCAAGGGACGTGCCAGCAAACAGATGATCCAGGACATTATCACCGATGCCGTTTCT 111690 Query 65305 ATTGAGAAAGGGTTCATCTT--GGACGCACTCCCATGTAATCTCATCGGTATGAACTCTG 65362 |||||| | | ||| |||| || || ||||| ||| || |||| |||||||| Sbjct 111689 ATTGAGCAGGAGTT--TCTTACTGAGGCTCTCCCTTGTGCCCTGCTCGGCATGAACTCCA 111632 Query 65363 AGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGT-G 65421 | ||| ||||||| || | || | |||||||||||| |||| | | Sbjct 111631 ACCTCATGAAGCAGTACATCGAATTCGTCGCTGATCGTCTCCTC------GTTGCTCTCG 111578 Query 65422 CCACCCA-----TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTG 65476 || | | | | || | | || || || ||||| ||||| ||||| ||||| Sbjct 111577 GCAACGAGAAGGTGTACAAGTCCACCAACCCTTTCGACTTCATGGAGAACATCTCCCTTG 111518 Query 65477 ATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 || |||||||||||||| |||||||| |||| ||||| Sbjct 111517 GCGGCAAGACCAACTTCTTCGAGAAGCGCGTTGCTGACTA 111478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596565722297600