Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717915.1_202016-08-31]
520 sequences; 36,350,275 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq419 120 4e-21
seq393 113 6e-19
seq118 105 8e-17
seq472 104 3e-16
>seq419
Length=242017
Score = 120 bits (132), Expect = 4e-21
Identities = 87/101 (86%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 1592192 AACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATC 1592251
||||||||||| |||||||| || ||||| |||| |||||| | || ||||||||||||
Sbjct 218913 AACTACCTCGATATCAAGCCCCTTCTCGACGTTGGATGCAAGACCGTCGCCAACATGATC 218854
Query 1592252 AAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292
||||||||| | |||||||| |||||||||||||| || ||
Sbjct 218853 AAGGGCAAGGCACCCGAGGAAATCCGCAAGACCTTCAATAT 218813
>seq393
Length=304890
Score = 113 bits (124), Expect = 6e-19
Identities = 205/300 (68%), Gaps = 0/300 (0%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| ||||| || || |||| ||| || || || |||||||| |||| ||||||||
Sbjct 7951 CTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACCGTTGGA 7892
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|| ||||| || || | ||| | ||| | ||| || | ||| ||| |||||
Sbjct 7891 AGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCGTTCAAGCC 7832
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|| || || ||| |||||| || | || || ||||| || |||||||| || ||
Sbjct 7831 AATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATACCATC 7772
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||| ||||||| || || || ||||| || || || || || | || ||
Sbjct 7771 AATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTGGAGTACC 7712
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||||| | ||||| | || ||||| |||| | |||||| || ||| ||
Sbjct 7711 GGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGTTGTATGT 7652
>seq118
Length=243722
Score = 105 bits (116), Expect = 8e-17
Identities = 174/250 (70%), Gaps = 1/250 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || | |||||| |||||| |||||||||||||| | || |||||
Sbjct 111469 GCCTTCTGGTAGTCAGCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATG 111528
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | |||||| ||| ||| ||||| | ||
Sbjct 111529 TTCTCCATGAAGTCGAAAGGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCAACG 111588
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| || || || ||||| || ||||||||||| ||||||| || |||||||||||
Sbjct 111589 AGGAGACGATCAGCGACGAATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGC 111648
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | ||| | | |||||| | ||| || ||||| ||| |||
Sbjct 111649 AGGGCACAAGGGAGAGCCTCAGTAAGAAACTCCTGCTCAATAGAAACGGCATCGGTGATA 111708
Query 868931 ATCTGCCTGG 868940
|| | |||||
Sbjct 111709 ATGT-CCTGG 111717
Score = 87.8 bits (96), Expect = 2e-11
Identities = 175/251 (70%), Gaps = 9/251 (4%)
Strand=Plus/Plus
Query 869216 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGC-CCG-AGA 869273
|| || ||||||||||| |||||||||||||| |||||| | || || || ||| ||
Sbjct 111820 AGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATG--GAAGCAAAGGCACCGCTGA 111877
Query 869274 AAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCT 869333
| ||||| ||||| ||||| ||||| | | || |||| || ||| || || | ||
Sbjct 111878 AGAAGATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAG--GTAGA-GTTCT 111934
Query 869334 CCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGA 869393
| | |||||| || ||||| || ||||| || | | | || | ||||| |
Sbjct 111935 TATCCTGGATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAA 111994
Query 869394 TGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGC 869452
|||| ||||||| || | | ||| |||||||||| ||||| ||||| |||||
Sbjct 111995 CGGCGTTGAAGAGGTATGTAC-GCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGG 112053
Query 869453 GAATAGGTCTC 869463
|| || || ||
Sbjct 112054 GAGTATGTTTC 112064
>seq472
Length=114315
Score = 104 bits (114), Expect = 3e-16
Identities = 102/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
||||||| ||||| || || || ||||| ||||| | ||| | || |||||||||
Sbjct 20428 GACAGCACTGGCGGAACCGTCACCTGCGTCATCCGCAATGCGCCCTCTGGTCTCGGCGAG 20487
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|| ||||| |||||| | ||||| | ||||||||||||||| |||| ||||| ||| |
Sbjct 20488 CCCTGCTTCGACAAGCTGCAGGCCACCCTCGCCCACGCCATGATGTCCATCCCCGCCGTC 20547
Query 19167 AAGGGATTCGAG 19178
|||| ||||||
Sbjct 20548 AAGGCCTTCGAG 20559
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107096526364840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |