Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717915.1_202016-08-31] 520 sequences; 36,350,275 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq118 143 4e-28 seq419 120 5e-21 seq242 98.7 2e-14 >seq118 Length=243722 Score = 143 bits (158), Expect = 4e-28 Identities = 222/309 (72%), Gaps = 11/309 (4%) Strand=Plus/Plus Query 794362 TCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAG 794421 ||||| ||||| || || ||||||||||| |||||||||||||| ||||||| | | Sbjct 111805 TCGTTAGAAAAGCTCAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAA--G 111862 Query 794422 AAACTGC-CCGA-GAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAA 794479 || || ||| ||| ||||| ||||| ||||| ||||| | || || |||| || | Sbjct 111863 CAAAGGCACCGCTGAAGAAGATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGA 111922 Query 794480 AAGTGTCCAG-GCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACC 794538 | || || | || | | |||||| || ||||| || ||||| || | | Sbjct 111923 AGGT----AGAGTTCTTATCCTGGATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATG 111978 Query 794539 GAGGGCACCGTGTCGATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTA 794597 | || | ||||| | |||| ||||||| || | || | | |||||||||| ||| Sbjct 111979 CAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTACG-CTGGGCAGGGTCCTTGATGTA 112037 Query 794598 GGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCC 794657 ||| ||||||||||| ||||| || || ||||||||||| || || ||||||||| || Sbjct 112038 GGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACC 112097 Query 794658 ATAAAAGCA 794666 ||| ||||| Sbjct 112098 ATAGAAGCA 112106 Score = 107 bits (118), Expect = 3e-17 Identities = 166/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976 |||||| |||||| |||||||||||||| | || ||||| |||||| | ||| Sbjct 111487 ACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAA 111546 Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACG 794036 ||||||| | | ||| ||||||| ||||| | | || || || || |||||| Sbjct 111547 GGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCAACGAGGAGACGATCAGCGACG 111606 Query 794037 AATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CACGGGCAGCGA 794095 ||||| |||||||| ||||||| || ||||||||||| || || || ||| || | Sbjct 111607 AATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGGGCACAAGGG-AGAGC 111665 Query 794096 CTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGG 794148 ||| | | |||||| | ||| || ||||| ||| |||| || | ||||| Sbjct 111666 CTCAGTAAGAAACTCCTGCTCAATAGAAACGGCATCGGTGATAATGT-CCTGG 111717 >seq419 Length=242017 Score = 120 bits (132), Expect = 5e-21 Identities = 87/101 (86%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 2035653 AACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATC 2035712 ||||||||||| ||||||||||| ||||| | || ||||||||||| |||||| | ||| Sbjct 218913 AACTACCTCGATATCAAGCCCCTTCTCGACGTTGGATGCAAGACCGTCGCCAACATGATC 218854 Query 2035713 AAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 ||||||||| | |||||||| |||||||||||||| || || Sbjct 218853 AAGGGCAAGGCACCCGAGGAAATCCGCAAGACCTTCAATAT 218813 >seq242 Length=10213 Score = 98.7 bits (108), Expect = 2e-14 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| ||||||||||||||||| |||||||||||| |||| || || ||| | | Sbjct 4611 GTACTTGGTAACGGCCTTGGTACCCTCGGAGACGGCGTGCTTGGCAAGCTCACCGGGGAG 4552 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| ||||| || | |||||| ||||| |||| Sbjct 4551 GATGAGGCGGACAGAGGTCTGAATCTCTCGGG 4520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916191085228280