Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717915.1_202016-08-31] 520 sequences; 36,350,275 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq448 98.7 7e-15 seq431 91.5 1e-12 >seq448 Length=194427 Score = 98.7 bits (108), Expect = 7e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 ||||| ||||||||| | |||| || |||||||| |||||||||||| | ||||||||| Sbjct 129714 GGTAAGGAAGGTCGTCTCCGAGGTAACTTGATGGGTAAGCGTGTCGATTTCTCTGCACGT 129773 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTC 432399 || || |||||| |||| | || || | ||| |||| || ||||| |||| Sbjct 129774 ACCGTCATTACTGGTGATGCCAACCTTTCCCTCCATGAGGTCGGTGTGCCTC 129825 Score = 86.0 bits (94), Expect = 5e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 || ||||||||||| | ||||||||||| |||||| | ||| |||| || | || ||| Sbjct 131157 GAGTTTTTCTTCCACGCCATGGCTGGTCGAGAAGGTCTCATTGATACTGCGGTCAAGACT 131216 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGA 435239 ||||| |||||||| ||||| || | | |||||| |||||||| Sbjct 131217 GCTGAAACTGGTTACATTCAGCGACGATTGGTCAAGGCTCTTGAAGA 131263 >seq431 Length=164038 Score = 91.5 bits (100), Expect = 1e-12 Identities = 194/290 (67%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || ||||| || || ||||||||||| ||||| | ||| | || | |||| | || Sbjct 21251 ACGAGACGGTTGTCGAAATCTTCACCACCCAAGTGAGTGTCACCGGCAGTAGACTTGACC 21310 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | ||| | || || |||| | | |||| ||||| ||| |||||||| | ||| Sbjct 21311 TCGAAGATACCCTCCTCAATGGTAAGGAGAGAGACATCGAAGGTACCACCACCAAGATCG 21370 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 || || || || || || || || || |||||||| || |||| || ||| Sbjct 21371 AAGATGAGGACGTTGCGCTCACCCTCAACCTTCTTGTCAAGACCGTAGGCAATGGCGGCA 21430 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 || || || || || || |||| | ||| || ||||| || || || ||||| || Sbjct 21431 GCGGTAGGCTCGTTGATGATTCGGAGAACGTTGAGACCGGCGATGAGACCCGCATCCTTG 21490 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 || || || | || || ||||| || || ||||| || || | |||||| Sbjct 21491 GTAGCCTGACGCTGAGAGTCGTTGAAGTAGGCAGGGACGGTGACAACGGC 21540 Score = 89.7 bits (98), Expect = 4e-12 Identities = 242/368 (66%), Gaps = 3/368 (1%) Strand=Plus/Plus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 ||||| |||||||| | ||| || ||||| ||||| || || || || | ||||||| Sbjct 19999 ATACCGTTGGCATCGAGATCGAAGGTGACCTCAATCTGGGGAACACCACGGGGAGCAGGG 20058 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | || | |||| || || || || ||| | || ||| Sbjct 20059 GGGATACCAGTGAGCTCGAACTTGCCCATGAGGTTGTTGTCCTTGGTGCGCTGGCGCTCA 20118 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 |||||| | | |||||| || ||| || || || || | || | || || | Sbjct 20119 CCCTCGTAGACCTGGATAAGGACACCAGGCTGGTTGTCGGAGAAGGTAGAGAAGACCTCG 20178 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 || || || ||||| || ||||| | || | |||||||| ||||||||||| Sbjct 20179 GACTTCTTGGTGGGAATGGTGGTGTTGCGGGGGATGAGCTTGGTCATCATACCACCAGCG 20238 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 281738 || || | ||| ||||| ||||| | || || | || | ||| | || | | || Sbjct 20239 GTCTCGATACCGAGAGAGAGAGGGGCAACGTCGAGGAGCAGAATCTCGTTGGTGGCCTTG 20298 Query 281739 C-ATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 | | || | |||| |||||||| || || | ||| ||||| || |||||||| ||| Sbjct 20299 CTAGAGGTGTCACCAGAGAGAATAGCAGCCTGGACAGCGGCACCGTAGGCAACAGCCTCA 20358 Query 281798 TCAGGATT 281805 ||||| || Sbjct 20359 TCAGGGTT 20366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740604870197520