Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717915.1_202016-08-31]
520 sequences; 36,350,275 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq496 93.3 8e-14
seq170 87.8 4e-12
>seq496
Length=70014
Score = 93.3 bits (102), Expect = 8e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || | ||| || || ||||| ||||| || || || || || || ||| |||
Sbjct 43579 ACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACC 43638
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||| || || || || || || || || | || || ||||| ||||| || || |||||
Sbjct 43639 GTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTT 43698
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
|| || ||||| | || || || || || || || | || || || | || ||
Sbjct 43699 GTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCGACCTCGAGGGTGAT 43758
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||||||||| | ||||| || || || |||||
Sbjct 43759 GGTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 43794
Score = 86.0 bits (94), Expect = 1e-11
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || | ||| ||||| || || ||||| || || ||||| || || | | ||
Sbjct 43808 CGGAGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCGGAGAGGGTGCGGCCA 43867
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || || || || || | || || ||||| ||||| || || |||||
Sbjct 43868 TCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTG 43927
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| || ||||| | || ||||| || || || || | || || || | || ||
Sbjct 43928 TCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATG 43987
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||||||||| | ||||| || || || |||||
Sbjct 43988 GTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 44022
>seq170
Length=295105
Score = 87.8 bits (96), Expect = 4e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || ||||| || || || || ||||| || || || || || | | ||
Sbjct 94078 CGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 94019
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || ||||||||||| |||| || || || || || || || |||||
Sbjct 94018 TCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTG 93959
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| || ||||| | || || || ||||| || || || || || || | || |||
Sbjct 93958 TCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATC 93899
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813
||||| || || | ||||| || || |||||||| ||
Sbjct 93898 GTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATGAT 93861
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981820658576280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |