Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717915.1_202016-08-31]
520 sequences; 36,350,275 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq496 102 5e-17
>seq496
Length=70014
Score = 102 bits (112), Expect = 5e-17
Identities = 147/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606
|| ||||| ||| || || ||||||||||||||||| ||||| | || || | ||
Sbjct 43820 TGGAGAGTCGACTCCTTCTGAATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGC 43879
Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666
|| ||||| |||||||| ||||||||||| | || | || || ||||| || ||
Sbjct 43880 TTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTG 43939
Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725
||| |||| ||| | ||||||| ||| || || || | ||||| || || |||||
Sbjct 43940 GACTTC-ACATTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGT 43998
Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750
| || || || ||||| ||||||
Sbjct 43999 GAGGGTCTTGACGAAGATTTGCATA 44023
Score = 84.2 bits (92), Expect = 1e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618
|| || || |||||||| |||||||| || || |||| || | || || ||||| |||
Sbjct 43604 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAA 43663
Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678
||||| ||||||||||| | || | ||| || ||||| || || | | || |
Sbjct 43664 ATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGGATCTT-GGACTTGACGTT 43722
Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737
||| | |||||| ||| || || || | ||||| || || ||||| | || || ||
Sbjct 43723 GTCGATAGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGAC 43782
Query 33738 AAAGATCTGCATA 33750
||||| ||||||
Sbjct 43783 GAAGATTTGCATA 43795
Score = 82.4 bits (90), Expect = 5e-11
Identities = 144/207 (70%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606
|| ||||| ||| || || ||||||||||||||||| ||||| | || || | ||
Sbjct 44048 TGGAGAGTCGACTCCTTCTGAATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGC 44107
Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666
|| ||||| |||||||| ||||||||||| | || | || || ||||| ||| ||
Sbjct 44108 TTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTT- 44166
Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725
| | || | ||| | || || ||| || || || | || || || || || ||
Sbjct 44167 GGACTTGACGTTGTCGATAGTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGT 44226
Query 33726 TAACGTTTTTACAAAGATCTGCATAGT 33752
|| || || || ||||||||||| ||
Sbjct 44227 CAAGGTCTTGACGAAGATCTGCATGGT 44253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328701916838400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |