Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717915.1_202016-08-31] 520 sequences; 36,350,275 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq496 102 5e-17 >seq496 Length=70014 Score = 102 bits (112), Expect = 5e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || ||||||||||||||||| ||||| | || || | || Sbjct 43820 TGGAGAGTCGACTCCTTCTGAATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGC 43879 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| |||||||| ||||||||||| | || | || || ||||| || || Sbjct 43880 TTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTG 43939 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 ||| |||| ||| | ||||||| ||| || || || | ||||| || || ||||| Sbjct 43940 GACTTC-ACATTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGT 43998 Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750 | || || || ||||| |||||| Sbjct 43999 GAGGGTCTTGACGAAGATTTGCATA 44023 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||| |||||||| || || |||| || | || || ||||| ||| Sbjct 43604 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAA 43663 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| ||||||||||| | || | ||| || ||||| || || | | || | Sbjct 43664 ATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGGATCTT-GGACTTGACGTT 43722 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | |||||| ||| || || || | ||||| || || ||||| | || || || Sbjct 43723 GTCGATAGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGAC 43782 Query 33738 AAAGATCTGCATA 33750 ||||| |||||| Sbjct 43783 GAAGATTTGCATA 43795 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || ||||||||||||||||| ||||| | || || | || Sbjct 44048 TGGAGAGTCGACTCCTTCTGAATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGC 44107 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| |||||||| ||||||||||| | || | || || ||||| ||| || Sbjct 44108 TTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTT- 44166 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | | || | ||| | || || ||| || || || | || || || || || || Sbjct 44167 GGACTTGACGTTGTCGATAGTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGT 44226 Query 33726 TAACGTTTTTACAAAGATCTGCATAGT 33752 || || || || ||||||||||| || Sbjct 44227 CAAGGTCTTGACGAAGATCTGCATGGT 44253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328701916838400