Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717915.1_202016-08-31]
520 sequences; 36,350,275 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq393 174 2e-38
seq118 123 3e-23
seq256 84.2 3e-11
>seq393
Length=304890
Score = 174 bits (192), Expect = 2e-38
Identities = 957/1512 (63%), Gaps = 63/1512 (4%)
Strand=Plus/Plus
Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280
||| ||| | ||| ||||||| || || | || || || || || ||||| |||
Sbjct 7585 CCCGCAGCATATGATCATGCGAGTCGCTGTTGGAATCTGGGGTGACGATATTGAGCGTGT 7644
Query 104281 CTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTC 104338
||||||||||||| || ||||| |||| | | ||| ||| |||| || || |
Sbjct 7645 CTTGGAGACATACAACCTCATGTCAAGCAAGTTCT--TCACTCATGCAAGCCCCACTTTA 7702
Query 104339 TTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398
||||| || ||||| ||| || || | || ||||||||| | | | ||||||
Sbjct 7703 TTCAACGCCGGTACTCCACAGCCTCAGCTTTCATCATGCTTCCTTGTTGATATGAAGGAG 7762
Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458
||| || | |||||||| | || || | | ||||| || || ||| ||||
Sbjct 7763 GACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCT 7822
Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 104518
|| |||||||| || || ||| | | |||| | ||| || || ||
Sbjct 7823 GGTGGTATTGGCTTGAACGCCCACCGAATCCGTGCCACTGGCTCTTACATCGCCGGTACC 7882
Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578
|||||| || | ||||| |||| ||||| || || || ||| ||| || || ||
Sbjct 7883 AATGGTACTTCCAACGGTATCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTAC 7942
Query 104579 GTAAATCAAGCTGGGCGTCGAAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGG 104632
|| | || | ||| | ||| || || |||| |||| ||||| ||||||
Sbjct 7943 GTTGACCAGGGTGG---TAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAACCATGG 7999
Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGC 104690
||||| || || | ||||||||||| | || || || ||| | ||||||| |||
Sbjct 8000 CACGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAGGAGGAGGTCCGC 8059
Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750
| | || || || |||| ||||| ||||| || ||||| ||||||||| | || |||
Sbjct 8060 GCT--CGTGACCTGTTCTTAGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGA 8117
Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGTG 104809
| ||| | ||| ||||| | || || || || || ||||| || | || |
Sbjct 8118 GAAACGGCGAATGGACTCTCATGTGCCCTAACGAATGC-CCTGGCCTTGCTGACTGCTAC 8176
Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACG 104869
||||| || ||||| || || ||| |||||||||| ||| ||| || | | || |
Sbjct 8177 GGTGACGAATTTGAGGCTCTGTACGAAAAGTACGAGAGAGAGGGTAAGG-GTC-GCAAGT 8234
Query 104870 GTGCCA--GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927
| || ||| | | ||| | || ||||| || | || || ||||| || | |
Sbjct 8235 CTATCAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACAGAGACCGGAAACC 8294
Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987
| | |||||| ||||| || ||| || | |||||||| |||||||| | ||| |
Sbjct 8295 CTTTCATGCTCTACAAGGATCACTGCAATCGCAAGAGTAACCAAAAGAACCTTGGTACCA 8354
Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047
|| || ||||| || || || || ||| | |||| | | |||||| ||||
Sbjct 8355 TCCGAAGCTCCAACCTGTGCACTGAGATCATTGAATACTGCGCCCCTGATGAGGTCGCTG 8414
Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCC---------CAAGTATGTGGATCCAGAGACAA 105098
| || ||||| || || | |||| || ||| |||| ||| | | |
Sbjct 8415 TTTGCAACCTTGCCTCCTTGTCTCTGCCCTCTTTTATCAACTATGAAGATGC--TTGCTA 8472
Query 105099 AGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACA 105158
||| || | | || || ||||| || || || ||| | || | ||||
Sbjct 8473 CGAC--TTCA-----AGAAGCTGCACGAGGTCACTCAAGTTGTTGTCCGCAATTTGAACA 8525
Query 105159 GAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACC 105218
| || || || ||||| || | |||||||| || ||| | ||||
Sbjct 8526 AGATCATCGACGTCAACCACTACCCTGTCCAAGAGGCTCGTAACAGCAACATGCGTCACC 8585
Query 105219 GTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCAC---G 105275
| || |||||||| ||||| || |||||||| |||| | ||||| | || |
Sbjct 8586 GACCCATTGGTCTTGGTGTGCAAGGTCTCGCTGATG---CCTTTCTTGCCCTCCGCATGC 8642
Query 105276 CATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACG 105335
| ||||| || || || || | || || || || |||||||| || ||||
Sbjct 8643 CCTTTGAGTCTCCTGAGGCTCGTGAGCTGAACAAGCAAATCTTCGAGACCATCTACCACG 8702
Query 105336 CCGCTCTT--GAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGA 105393
| || ||| | | || || | | | || ||| || ||||| || ||||| |
Sbjct 8703 CTGCCCTTACTACGTCTGTGCA-ACTCGCCA-AGGAGGAAGGTCCCTACTCCACCTTCAA 8760
Query 105394 GGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC---AA 105450
||| || || || || | || | || || || || |||||| | | || || |
Sbjct 8761 GGGCTCCCCTGCCTCTGAGGGTATTCTCCAGTTCGACATGTGGAATGTCAAGCCCTCTGA 8820
Query 105451 GCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAG 105510
||| | ||||||||| | ||| || ||||| | ||| | || |||||
Sbjct 8821 CCTT---TGGGACTGGGAACCCCTCCGAGAGGATGTCAAGACTCACGGTATCCGCAACAG 8877
Query 105511 TCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 105570
||| ||| | ||||| ||||| || ||| ||| | || || | || || || |||||
Sbjct 8878 TCTGCTCGTTGCTCCTATGCCTACCGCCAGTACCTCGCAGATTCTTGGCAACAACGAATG 8937
Query 105571 CTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGAT 105630
|||||| || ||||| | |||||||| | | || ||| || || ||||| | |
Sbjct 8938 CTTTGAGCCTTACACCTCCAACATCTACCAACGCCGAGTCCTTGCTGGCGAGTTCCAGGT 8997
Query 105631 TGTCAA---CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATAT 105687
|||||| | || |||| |||| || || || ||||| |||||| | | |||
Sbjct 8998 TGTCAACCCCTGGCTTCTCAAGGAT---CTTGTCGACATGGGTCTTTGGTCCGATGCTAT 9054
Query 105688 GAAGGATCTCAT 105699
|||| | | |||
Sbjct 9055 GAAGAACCGCAT 9066
>seq118
Length=243722
Score = 123 bits (136), Expect = 3e-23
Identities = 350/525 (67%), Gaps = 17/525 (3%)
Strand=Plus/Minus
Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTA---AAT 94497
||||| ||||| ||| | |||||||| |||||| | |||| ||||| | | | | |
Sbjct 112283 TGGACAGCTGAGGAGATCGATCTCTCCAAGGATCTCCACGACTGGAACAACCGATTGACT 112224
Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557
| | || | | ||||| |||| || || ||||| |||| ||||| || ||
Sbjct 112223 TCAGACGAGCAATACTTCATCTCCCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATC 112164
Query 94558 GTTTTTGAGAATATCAATAA-CAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGAT 94615
|| ||||||| | | | | | | || | ||||| || |||| | || || |||
Sbjct 112163 GTCAATGAGAATCTTGTTGAGCGATTCAGCGGC-GAGGTCCAGATCCCC-GAGGCTCGAT 112106
Query 94616 CCTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTC 94674
|||||||| | ||| |||| ||| | | | || || |||||| |||
Sbjct 112105 GCTTCTATGGTTTCCAGA-TCATGATGGAGAACATCCACTCCGAAACATACTCCCTCCTC 112047
Query 94675 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 94734
|| || | || || ||||| ||| || | | ||||| | ||| | | ||
Sbjct 112046 ATCGATACCTACATCAAGGACCCTGCCCAGCGTACATACCTCTTCAACGCCGTTGACACT 111987
Query 94735 GTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTCG 94791
|||| || || | |||||| ||||||||||| || ||| | |||| || ||
Sbjct 111986 ATTCCTTGCATCCGAAAGAAGGCGGATTGGGCCATCCGATGGATCCAGGATAAGAACTC- 111928
Query 94792 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 94851
| |||| ||| |||| || | || ||||| |||||||||||||||||| |||
Sbjct 111927 --TACCTTCGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGT 111870
Query 94852 TCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910
|||| ||| | || | |||||||||||||| || |||||||| ||||| |||| ||
Sbjct 111869 GCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTC 111811
Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
|||||||| || |||||||| ||||| || ||| || |||||
Sbjct 111810 TAACGAGCTCATTTCTCGTGATGAGGGTCTTCACACCGACTTTGC 111766
>seq256
Length=206262
Score = 84.2 bits (92), Expect = 3e-11
Identities = 179/262 (68%), Gaps = 9/262 (3%)
Strand=Plus/Plus
Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762
|||||||||||| || || |||| |||||| || || | || | | | || ||
Sbjct 182795 GGCATCAATCTCGTCGATAAAGATGATGCAAGGGGCGTTCTTACGGCCCTCGGCGAACAG 182854
Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 9821
||| ||||||||| | || ||||| ||||||||||| || || | | || ||
Sbjct 182855 ATCTCGTACACGCGAAGGTCCAACACCGACAAACATCTCAACGAATTCGGAACCGCTCAC 182914
Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881
| || | |||||| || ||| ||||| || |||| ||| || | |||||||| |
Sbjct 182915 ACTGAA-GAAGGGTACTCCAGACTCACCTGCCGTGGCCTTGGCAAGCAACGTCTTACCAG 182973
Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC---ACTTCCAAAGT 9938
|||| || || || | | ||||||||||| |||||||| || || |||| |
Sbjct 182974 TACCGGGGGGCCCAGCCAAAATAGCACCTCGTGGGATCTTGGCACCTAGCTTTTCAAACT 183033
Query 9939 ATCTCTCAGGTTGCTT-AAGAA 9959
||||||| ||||| |||||
Sbjct 183034 ---TCTCAGGCTGCTTCAAGAA 183052
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583257008804800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |