Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F001717915.1_202016-08-31] 520 sequences; 36,350,275 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq393 181 1e-40 seq118 143 4e-29 >seq393 Length=304890 Score = 181 bits (200), Expect = 1e-40 Identities = 1163/1846 (63%), Gaps = 43/1846 (2%) Strand=Plus/Minus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 || ||||| || || | || || | | |||||| || |||||||| ||||| || ||| Sbjct 9342 GTGAACTGGATAGGGGCAGCAGCAGCCTGTGTACGGAGGTAGTACATGCCAGTCTTGAGA 9283 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901 || || |||| || ||| |||||||| || | ||| |||| || || Sbjct 9282 CCGAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATGGTAGGGTCCTTCATG 9223 Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961 ||||| || | |||||| ||||| ||||| || || | ||||| ||||| | | | Sbjct 9222 TGAATGTTGAGAGACTGAGACTGATCAATGAAGGCACCACGGTCAGCAGCCATCTGCACA 9163 Query 76962 ATG-GTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAG 77020 | ||| | ||| ||| ||||| | ||| ||| | | ||||| || | || | Sbjct 9162 ACCTGTCGCT-GAGAAATCTCCCACACAGTCTTGTACAGAGCCTTGATCTCGGCAGGGAT 9104 Query 77021 GTTTG---TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATT 77077 ||| | | || || || ||||| ||| | || || ||||| ||| |||| Sbjct 9103 GTTGGGGATGTTCTGGATAGAACCGTTATCAGCAATGATGCGGTTCTTCATAGCATCGGA 9044 Query 77078 CCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCC 77137 ||| | | | || | | | | || || || || || | || || || || Sbjct 9043 CCAAAGACCCATGTCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCC 8984 Query 77138 AGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCC 77197 || | |||| || ||| || || ||| || || || | |||| ||||| || Sbjct 8983 AGCAAGGACTCGGCGTTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCATTCGTTGTTGCC 8924 Query 77198 CAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACC 77257 | ||| || | ||| || || |||||||| || || | | ||| || | || ||| Sbjct 8923 AAGAATCTGCGAGGTACTGGCGGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACC 8864 Query 77258 ATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATC 77317 || || ||| | ||| || || ||| |||||||| || || || |||| Sbjct 8863 GTGAGTCTTGACATCCTCTCGGAGGGGTTCCCAGTCCCAAAGGTCAGAGGGCTTGACATT 8804 Query 77318 CCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGG 77377 ||| | ||| | || ||||| || | | ||| || || || | || || || Sbjct 8803 CCACATGTCGAACTGGAGAATACCCTCAGAGGCAGGGGAGCCCTTGAAGGTGGAGTAGGG 8744 Query 77378 TCCTTCTGTTTCAGCTAGTT-CACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGA 77436 ||||| | || |||| |||| || | || ||| || || || |||| Sbjct 8743 ACCTTCCTCCTTGGCGAGTTGCACAGA-CGTAGTAAGGGCAGCGTGGTAGATGGTCTCGA 8685 Query 77437 AAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAG--AAT 77494 | || | ||| || || || | || ||| | ||||| || ||| | | || Sbjct 8684 AGATTTGCTTGTTCAGCTCACGAGCCTCAGGAGACTCAAAGGGC--ATGCGGAGGGCAAG 8627 Query 77495 AAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAAT 77554 ||||||||| || | || || || |||| |||||| |||| || | | | ||| | Sbjct 8626 AAAGGCATCAGCGAGACCTTGCACACCAAGACCAATGGGTCGGTGACGCATGTTGCTGTT 8567 Query 77555 TTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAAC 77614 ||| ||| | | ||| || | || | ||| || || || || | ||| | ||||| Sbjct 8566 ACGAGCCTCTTGGACAGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAAC 8507 Query 77615 TACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCT--ATA----ACAAA 77668 |||| | || || | || || || || | | ||||| ||| | ||| Sbjct 8506 AACTTGAGTGACCTCGTGCAGCTTCTTGAAGTCGTAGCAAGCATCTTCATAGTTGATAAA 8447 Query 77669 CATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTG 77728 | || || | || || || || ||||| || ||||||| || | | |||| Sbjct 8446 AGAGGGCAGAGACAAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTC 8387 Query 77729 TATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTT 77788 || ||||| || || || || | | ||| || || || || | |||||| ||||| Sbjct 8386 AATGATCTCAGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTT 8327 Query 77789 TTTATTGCA-TGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGA 77847 |||||| ||| ||||| || || || || || | ||||| || |||| | || | Sbjct 8326 GCGATTGCAGTGA-TCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAA 8268 Query 77848 TAATAGATTTCCAGACGACTCT-AGCTTTTATCATAGATTTGTATCGCCT---CTCTCTT 77903 ||| | | ||| | | ||| ||| || || ||| ||| | | | |||||| Sbjct 8267 GAATGGCGTACCAAA-GTTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTC 8212 Query 77904 TCATA--TTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGC 77961 || || || ||| | |||| |||||||| || || | ||| | | ||||||| Sbjct 8211 TCGTACTTTTCGTACAGAGCC--TCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGC 8154 Query 77962 ATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGAT 78021 |||| || |||||||| | | ||| || || | | || || || ||||| || |||| Sbjct 8153 ATTCGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGAT 8094 Query 78022 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCT 78081 |||| ||||| ||||| | || || || || | | || || || || ||||| Sbjct 8093 CAGGGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCT 8034 Query 78082 TTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAA 78141 || ||||| || ||||| | | || | ||||||||||| || || || || | Sbjct 8033 TTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGG 7974 Query 78142 CTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCA 78201 | |||||||| || ||||| ||||| || | || | || ||||| || | || | || Sbjct 7973 CACCAGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCA 7914 Query 78202 ACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGC 78261 ||| |||| |||||||| || || ||||| || || | || ||| ||| | || | Sbjct 7913 GCATGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCAC 7854 Query 78262 GAATATTACTAATGGAT-ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGT 78320 | || | | | | | || || || || |||||||| || || | || ||| Sbjct 7853 GGAT-TCGGTGGGCGTTCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTC 7795 Query 78321 TTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || | |||||||||||||| || || ||||| ||| |||| | || ||| || || Sbjct 7794 TTGAGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGAT 7735 Query 78381 GACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCAT 78440 || | ||| | || ||| || || || ||||| || || |||||| || || | Sbjct 7734 GAAAGCTGAGGCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAAC 7675 Query 78441 TTTTCAGAAAGTAGATTGTATGT-TTCAATA---GCTGATTCTATGTC-CCATTGATGAA 78495 || || | || |||||||| | ||| | ||| | | | ||| || | | Sbjct 7674 TTGCTTGACATGAGGTTGTATGTCTCCAAGACACGCTCAATAT-CGTCACCCCAG----A 7620 Query 78496 TTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTT 78555 |||| || || || ||||| | ||||||||| || | ||| | | || | || | Sbjct 7619 TTCCAACAGCGACTCGCATGATCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATCT 7560 Query 78556 TCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 78601 | |||||||||| | ||| ||| || |||||||||||||| Sbjct 7559 GTAGCAAGTATGATCTGGACAAGGTTCGGAAGCCAAAATAGTTGTA 7514 >seq118 Length=243722 Score = 143 bits (158), Expect = 4e-29 Identities = 370/561 (66%), Gaps = 12/561 (2%) Strand=Plus/Plus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| ||||| || |||||||| ||||| | | ||| | ||||||||||| | || Sbjct 111762 ACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCAG 111821 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 ||| ||||| || ||||| || |||||||| || || | || || | || ||||| Sbjct 111822 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 111881 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGT---G 48316 || || || ||||| ||||| || ||| | || || | | | | || | | Sbjct 111882 GATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCCTG 111941 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| || |||||||| |||||||| | ||||| || || || | || || Sbjct 111942 GATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTT 112001 Query 48377 AAAGAGAAAGtttttttCATTGCTA---TCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 ||||| || | | | | | || || | ||| ||||| || | || || Sbjct 112002 GAAGAG---GTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTA 112058 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 |||||||||| || || || || ||||| || || || || |||| || || | Sbjct 112059 TGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGG 112118 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 |||||| ||||| | ||||| ||| | | ||||||||| || || || || || Sbjct 112119 GATCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGC 112178 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGT---TTATT 48610 ||| || || || | | || || || |||| |||| ||||||| | || || Sbjct 112179 AGCGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTT 112238 Query 48611 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 |||||| | || ||| || || | ||| | || ||||||||||| || || |||||||| Sbjct 112239 CCAGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGC 112298 Query 48671 TTTTTTATACATATTCCATAT 48691 || || ||||| | ||| || Sbjct 112299 CTTCTTGTACATTTGCCAGAT 112319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694664284652800